| Literature DB >> 25824568 |
Venkata R Krishnamurthy1, Mohammed Y R Sardar1, Yu Ying2, Xuezheng Song2, Carolyn Haller1, Erbin Dai1, Xiaocong Wang3, Donny Hanjaya-Putra1, Lijun Sun4, Vasilios Morikis5, Scott I Simon5, Robert J Woods6, Richard D Cummings2, Elliot L Chaikof1.
Abstract
Blockade of P-selectin (Entities:
Mesh:
Substances:
Year: 2015 PMID: 25824568 PMCID: PMC4423566 DOI: 10.1038/ncomms7387
Source DB: PubMed Journal: Nat Commun ISSN: 2041-1723 Impact factor: 14.919
Per-residue MM/GBSA interaction energies[a] for interactions of P-selectin with residues in PSGL-1 and GSnP-6
| PSGL-1 | GSnP-6 | PSGL-1 | GSnP-6 | ||
|---|---|---|---|---|---|
| Y/YC 605[ | −1.4 ± 0.6 | −1.3 ± 0.6 | Neu5Ac | −2.7 ± 0.8 | −2.6 ± 0.8 |
| Y/YC 607[ | −5.5 ± 0.7 | −6.0 ± 0.6 | Core-2 Gal | −4.2 ± 0.7 | −4.2 ± 0.7 |
| Y/YC 610[ | −0.8 ± 0.4 | −0.6 ± 0.3 | GlcNAc | −3.3 ± 0.6 | −3.2 ± 0.5 |
| SO3– 605[ | −1.9 ± 0.8 | −2.3 ± 0.9 | Fuc | −4.8 ± 1.3 | −4.7 ± 1.3 |
| SO3– 607[ | −2.9 ± 0.9 | −3.5 ± 0.8 | GalNAc | −0.6 ± 0.3 | −0.4 ± 0.2 |
| SO3– 610[ | −0.8 ± 0.6 | −0.8 ± 0.4 | Gal | 0.1 ± 0.1 | 0.1 ± 0.1 |
| Subtotal | −13.3 ± 1.7 | −14.1 ± 1.5 | Subtotal | −15.5 ± 1.8 | −15.0 ± 1.8 |
| Amino Acids | |||||
| K603[ | N/A | 1.3 ± 0.1 | L613 | −4.1 ± 1.1 | −3.4 ± 1.2 |
| E604 | 0.1 ± 0.2 | −0.6 ± 0.1 | P614 | −1.9 ± 1.2 | −1.3 ± 1.0 |
| E606 | −1.2 ± 0.4 | −1.2 ± 0.3 | E615 | −0.9 ± 0.2 | −0.9 ± 0.2 |
| L608 | −2.2 ± 1.2 | −3.3 ± 0.8 | T616[ | −1.4 ± 0.3 | −1.3 ± 0.4 |
| D609 | −1.8 ± 0.7 | −1.9 ± 0.7 | E617 | −0.6 ± 0.3 | −0.5 ± 0.3 |
| D611 | −0.7 ± 0.1 | −0.7 ± 0.1 | P618 | −0.4 ± 0.1 | −0.4 ± 0.2 |
| F612 | −1.2 ± 0.6 | −0.9 ± 0.5 | |||
| Subtotal | −16.3 ± 2.3 | −15.1 ± 2.1 | |||
| Total Interaction Energy | −45.1 ± 3.4 | −44.6 ± 3.1 | |||
All results are in kcal/mol. The entropy contributions are not included in these results.
Contribution from tyrosine sulfate or tyrosine sulfonate not including the SO3– group.
SO3– is counted as a residue in the energy decomposition, instead of –O-SO3– or –CH2–SO3–.
Glycosylation site.
Numbering based on the crystal structure.