Literature DB >> 25819971

The N-Terminal GH10 Domain of a Multimodular Protein from Caldicellulosiruptor bescii Is a Versatile Xylanase/β-Glucanase That Can Degrade Crystalline Cellulose.

Xianli Xue1, Rong Wang2, Tao Tu1, Pengjun Shi1, Rui Ma1, Huiying Luo1, Bin Yao3, Xiaoyun Su3.   

Abstract

The genome of the thermophilic bacterium Caldicellulosiruptor bescii encodes three multimodular enzymes with identical C-terminal domain organizations containing two consecutive CBM3b modules and one glycoside hydrolase (GH) family 48 (GH48) catalytic module. However, the three proteins differ much in their N termini. Among these proteins, CelA (or C. bescii Cel9A [CbCel9A]/Cel48A) with a GH9/CBM3c binary partner in the N terminus has been shown to use a novel strategy to degrade crystalline cellulose, which leads to its outstanding cellulose-cleaving activity. Here we show that C. bescii Xyn10C (CbXyn10C), the N-terminal GH10 domain from CbXyn10C/Cel48B, can also degrade crystalline cellulose, in addition to heterogeneous xylans and barley β-glucan. The data from substrate competition assays, mutational studies, molecular modeling, and docking point analyses point to the existence of only one catalytic center in the bifunctional xylanase/β-glucanase. The specific activities of the recombinant CbXyn10C on Avicel and filter paper were comparable to those of GH9/CBM3c of the robust CelA expressed in Escherichia coli. Appending one or two cellulose-binding CBM3bs enhanced the activities of CbXyn10C in degrading crystalline celluloses, which were again comparable to those of the GH9/CBM3c-CBM3b-CBM3b truncation mutant of CelA. Since CbXyn10C/Cel48B and CelA have similar domain organizations and high sequence homology, the endocellulase activity observed in CbXyn10C leads us to speculate that CbXyn10C/Cel48B may use the same strategy that CelA uses to hydrolyze crystalline cellulose, thus helping the excellent crystalline cellulose degrader C. bescii acquire energy from the environment. In addition, we also demonstrate that CbXyn10C may be an interesting candidate enzyme for biotechnology due to its versatility in hydrolyzing multiple substrates with different glycosidic linkages.
Copyright © 2015, American Society for Microbiology. All Rights Reserved.

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Year:  2015        PMID: 25819971      PMCID: PMC4421074          DOI: 10.1128/AEM.00432-15

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  31 in total

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2.  Multiple sequence alignment using ClustalW and ClustalX.

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3.  A novel pH-stable, bifunctional xylanase isolated from a deep-sea microorganism, Demequina sp. JK4.

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Journal:  Appl Environ Microbiol       Date:  2012-09-28       Impact factor: 4.792

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7.  Biochemical analysis of a beta-D-xylosidase and a bifunctional xylanase-ferulic acid esterase from a xylanolytic gene cluster in Prevotella ruminicola 23.

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Journal:  J Bacteriol       Date:  2009-03-20       Impact factor: 3.490

8.  Molecular and biochemical analyses of CbCel9A/Cel48A, a highly secreted multi-modular cellulase by Caldicellulosiruptor bescii during growth on crystalline cellulose.

Authors:  Zhuolin Yi; Xiaoyun Su; Vanessa Revindran; Roderick I Mackie; Isaac Cann
Journal:  PLoS One       Date:  2013-12-16       Impact factor: 3.240

9.  Supplementing with non-glycoside hydrolase proteins enhances enzymatic deconstruction of plant biomass.

Authors:  Xiaoyun Su; Jing Zhang; Roderick I Mackie; Isaac K O Cann
Journal:  PLoS One       Date:  2012-08-27       Impact factor: 3.240

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Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969

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  15 in total

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Authors:  Laura L Lee; James R Crosby; Gabriel M Rubinstein; Tunyaboon Laemthong; Ryan G Bing; Christopher T Straub; Michael W W Adams; Robert M Kelly
Journal:  Extremophiles       Date:  2019-07-29       Impact factor: 2.395

2.  Comparative Biochemical and Structural Analysis of Novel Cellulose Binding Proteins (Tāpirins) from Extremely Thermophilic Caldicellulosiruptor Species.

Authors:  Laura L Lee; William S Hart; Vladimir V Lunin; Markus Alahuhta; Yannick J Bomble; Michael E Himmel; Sara E Blumer-Schuette; Michael W W Adams; Robert M Kelly
Journal:  Appl Environ Microbiol       Date:  2019-01-23       Impact factor: 4.792

3.  Genomic and physiological analyses reveal that extremely thermophilic Caldicellulosiruptor changbaiensis deploys uncommon cellulose attachment mechanisms.

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4.  A Novel Subfamily of Endo-β-1,4-Glucanases in Glycoside Hydrolase Family 10.

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Review 5.  Carbohydrate active enzyme domains from extreme thermophiles: components of a modular toolbox for lignocellulose degradation.

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7.  Functional Analysis of the Glucan Degradation Locus in Caldicellulosiruptor bescii Reveals Essential Roles of Component Glycoside Hydrolases in Plant Biomass Deconstruction.

Authors:  Jonathan M Conway; Bennett S McKinley; Nathaniel L Seals; Diana Hernandez; Piyum A Khatibi; Suresh Poudel; Richard J Giannone; Robert L Hettich; Amanda M Williams-Rhaesa; Gina L Lipscomb; Michael W W Adams; Robert M Kelly
Journal:  Appl Environ Microbiol       Date:  2017-12-01       Impact factor: 4.792

8.  High activity CAZyme cassette for improving biomass degradation in thermophiles.

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Journal:  Biotechnol Biofuels       Date:  2018-02-01       Impact factor: 6.040

9.  Improvement of the catalytic efficiency of a hyperthermophilic xylanase from Bispora sp. MEY-1.

Authors:  Xiaoyu Wang; Fei Zheng; Yuan Wang; Tao Tu; Rui Ma; Xiaoyun Su; Shuai You; Bin Yao; Xiangming Xie; Huiying Luo
Journal:  PLoS One       Date:  2017-12-18       Impact factor: 3.240

10.  Production and Partial Characterization of an Alkaline Xylanase from a Novel Fungus Cladosporium oxysporum.

Authors:  Guo-Qiang Guan; Peng-Xiang Zhao; Jin Zhao; Mei-Juan Wang; Shu-Hao Huo; Feng-Jie Cui; Jian-Xin Jiang
Journal:  Biomed Res Int       Date:  2016-04-26       Impact factor: 3.411

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