Literature DB >> 31392469

Genomic and physiological analyses reveal that extremely thermophilic Caldicellulosiruptor changbaiensis deploys uncommon cellulose attachment mechanisms.

Asma M A M Khan1, Carl Mendoza1, Valerie J Hauk1, Sara E Blumer-Schuette2.   

Abstract

The genus Caldicellulosiruptor is comprised of extremely thermophilic, heterotrophic anaerobes that degrade plant biomass using modular, multifunctional enzymes. Prior pangenome analyses determined that this genus is genetically diverse, with the current pangenome remaining open, meaning that new genes are expected with each additional genome sequence added. Given the high biodiversity observed among the genus Caldicellulosiruptor, we have sequenced and added a 14th species, Caldicellulosiruptor changbaiensis, to the pangenome. The pangenome now includes 3791 ortholog clusters, 120 of which are unique to C. changbaiensis and may be involved in plant biomass degradation. Comparisons between C. changbaiensis and Caldicellulosiruptor bescii on the basis of growth kinetics, cellulose solubilization and cell attachment to polysaccharides highlighted physiological differences between the two species which are supported by their respective gene inventories. Most significantly, these comparisons indicated that C. changbaiensis possesses uncommon cellulose attachment mechanisms not observed among the other strongly cellulolytic members of the genus Caldicellulosiruptor.

Entities:  

Keywords:  Caldicellulosiruptor; Cellulase; Extreme thermophile; Tāpirin

Mesh:

Substances:

Year:  2019        PMID: 31392469     DOI: 10.1007/s10295-019-02222-1

Source DB:  PubMed          Journal:  J Ind Microbiol Biotechnol        ISSN: 1367-5435            Impact factor:   3.346


  84 in total

Review 1.  Continually emerging mechanistic complexity of the multi-enzyme cellulosome complex.

Authors:  Steven P Smith; Edward A Bayer; Mirjam Czjzek
Journal:  Curr Opin Struct Biol       Date:  2017-04-06       Impact factor: 6.809

2.  Improved growth media and culture techniques for genetic analysis and assessment of biomass utilization by Caldicellulosiruptor bescii.

Authors:  Joel Farkas; Daehwan Chung; Minseok Cha; Jennifer Copeland; Philip Grayeski; Janet Westpheling
Journal:  J Ind Microbiol Biotechnol       Date:  2012-11-13       Impact factor: 3.346

3.  Heterologous co-expression of two β-glucanases and a cellobiose phosphorylase resulted in a significant increase in the cellulolytic activity of the Caldicellulosiruptor bescii exoproteome.

Authors:  Sun-Ki Kim; Daehwan Chung; Michael E Himmel; Yannick J Bomble; Janet Westpheling
Journal:  J Ind Microbiol Biotechnol       Date:  2019-02-20       Impact factor: 3.346

4.  Detection of a novel active transposable element in Caldicellulosiruptor hydrothermalis and a new search for elements in this genus.

Authors:  Daehwan Chung; Joel Farkas; Janet Westpheling
Journal:  J Ind Microbiol Biotechnol       Date:  2013-03-10       Impact factor: 3.346

5.  Molecular and biochemical analyses of CbCel9A/Cel48A, a highly secreted multi-modular cellulase by Caldicellulosiruptor bescii during growth on crystalline cellulose.

Authors:  Zhuolin Yi; Xiaoyun Su; Vanessa Revindran; Roderick I Mackie; Isaac Cann
Journal:  PLoS One       Date:  2013-12-16       Impact factor: 3.240

6.  Heterologous expression of family 10 xylanases from Acidothermus cellulolyticus enhances the exoproteome of Caldicellulosiruptor bescii and growth on xylan substrates.

Authors:  Sun-Ki Kim; Daehwan Chung; Michael E Himmel; Yannick J Bomble; Janet Westpheling
Journal:  Biotechnol Biofuels       Date:  2016-08-22       Impact factor: 6.040

7.  Expression of the Acidothermus cellulolyticus E1 endoglucanase in Caldicellulosiruptor bescii enhances its ability to deconstruct crystalline cellulose.

Authors:  Daehwan Chung; Jenna Young; Minseok Cha; Roman Brunecky; Yannick J Bomble; Michael E Himmel; Janet Westpheling
Journal:  Biotechnol Biofuels       Date:  2015-08-13       Impact factor: 6.040

8.  Cellulosic ethanol production via consolidated bioprocessing at 75 °C by engineered Caldicellulosiruptor bescii.

Authors:  Daehwan Chung; Minseok Cha; Elise N Snyder; James G Elkins; Adam M Guss; Janet Westpheling
Journal:  Biotechnol Biofuels       Date:  2015-10-06       Impact factor: 6.040

9.  NCBI prokaryotic genome annotation pipeline.

Authors:  Tatiana Tatusova; Michael DiCuccio; Azat Badretdin; Vyacheslav Chetvernin; Eric P Nawrocki; Leonid Zaslavsky; Alexandre Lomsadze; Kim D Pruitt; Mark Borodovsky; James Ostell
Journal:  Nucleic Acids Res       Date:  2016-06-24       Impact factor: 16.971

10.  The Multi Domain Caldicellulosiruptor bescii CelA Cellulase Excels at the Hydrolysis of Crystalline Cellulose.

Authors:  Roman Brunecky; Bryon S Donohoe; John M Yarbrough; Ashutosh Mittal; Brian R Scott; Hanshu Ding; Larry E Taylor Ii; Jordan F Russell; Daehwan Chung; Janet Westpheling; Sarah A Teter; Michael E Himmel; Yannick J Bomble
Journal:  Sci Rep       Date:  2017-08-29       Impact factor: 4.379

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  1 in total

Review 1.  Insights into Thermophilic Plant Biomass Hydrolysis from Caldicellulosiruptor Systems Biology.

Authors:  Sara E Blumer-Schuette
Journal:  Microorganisms       Date:  2020-03-10
  1 in total

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