Literature DB >> 25819921

Long intervening non-coding RNA 00320 is human brain-specific and highly expressed in the cortical white matter.

James D Mills1, Jieqiong Chen, Woojin S Kim, Paul D Waters, Avanita S Prabowo, Eleonora Aronica, Glenda M Halliday, Michael Janitz.   

Abstract

Pervasive transcription of the genome produces a diverse array of functional non-coding RNAs (ncRNAs). One particular class of ncRNAs, long intervening non-coding RNAs (lincRNAs) are thought to play a role in regulating gene expression and may be a major contributor to organism and tissue complexity. The human brain with its heterogeneous cellular make-up is a rich source of lincRNAs; however, the functions of the majority of lincRNAs are unknown. Recently, by completing RNA sequencing (RNA-Seq) of the human frontal cortex, we identified linc00320 as being highly expressed in the white matter compared to grey matter in multiple system atrophy (MSA) brain. Here, we further investigate the expression patterns of linc00320 and conclude that it is involved in specific brain regions rather than having involvement in the MSA disease process. We also show that the full-length linc00320 is only expressed in human brain tissue and not in other primates, suggesting that it may be involved in improved functional connectivity for higher human brain cognition.

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Year:  2015        PMID: 25819921     DOI: 10.1007/s10048-015-0445-1

Source DB:  PubMed          Journal:  Neurogenetics        ISSN: 1364-6745            Impact factor:   2.660


  55 in total

1.  Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method.

Authors:  K J Livak; T D Schmittgen
Journal:  Methods       Date:  2001-12       Impact factor: 3.608

2.  Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses.

Authors:  Moran N Cabili; Cole Trapnell; Loyal Goff; Magdalena Koziol; Barbara Tazon-Vega; Aviv Regev; John L Rinn
Journal:  Genes Dev       Date:  2011-09-02       Impact factor: 11.361

3.  A universal scaling law between gray matter and white matter of cerebral cortex.

Authors:  K Zhang; T J Sejnowski
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-09       Impact factor: 11.205

4.  The fragile X mental retardation protein binds specifically to its mRNA via a purine quartet motif.

Authors:  C Schaeffer; B Bardoni; J L Mandel; B Ehresmann; C Ehresmann; H Moine
Journal:  EMBO J       Date:  2001-09-03       Impact factor: 11.598

5.  Diversity and conservation of CELF1 and CELF2 RNA and protein expression patterns during embryonic development.

Authors:  Y Blech-Hermoni; S J Stillwagon; A N Ladd
Journal:  Dev Dyn       Date:  2013-04-15       Impact factor: 3.780

6.  Second consensus statement on the diagnosis of multiple system atrophy.

Authors:  S Gilman; G K Wenning; P A Low; D J Brooks; C J Mathias; J Q Trojanowski; N W Wood; C Colosimo; A Dürr; C J Fowler; H Kaufmann; T Klockgether; A Lees; W Poewe; N Quinn; T Revesz; D Robertson; P Sandroni; K Seppi; M Vidailhet
Journal:  Neurology       Date:  2008-08-26       Impact factor: 9.910

7.  EDEN-BP-dependent post-transcriptional regulation of gene expression in Xenopus somitic segmentation.

Authors:  Carole Gautier-Courteille; Christophe Le Clainche; Carine Barreau; Yann Audic; Antoine Graindorge; Dominique Maniey; H Beverley Osborne; Luc Paillard
Journal:  Development       Date:  2004-11-17       Impact factor: 6.868

8.  MicroRNA-146a: a key regulator of astrocyte-mediated inflammatory response.

Authors:  Anand Iyer; Emanuele Zurolo; Avanita Prabowo; Kees Fluiter; Wim G M Spliet; Peter C van Rijen; Jan A Gorter; Eleonora Aronica
Journal:  PLoS One       Date:  2012-09-13       Impact factor: 3.240

9.  The splicing factor SRSF1 regulates apoptosis and proliferation to promote mammary epithelial cell transformation.

Authors:  Olga Anczuków; Avi Z Rosenberg; Martin Akerman; Shipra Das; Lixing Zhan; Rotem Karni; Senthil K Muthuswamy; Adrian R Krainer
Journal:  Nat Struct Mol Biol       Date:  2012-01-15       Impact factor: 15.369

10.  Organismal complexity, cell differentiation and gene expression: human over mouse.

Authors:  Alexander E Vinogradov; Olga V Anatskaya
Journal:  Nucleic Acids Res       Date:  2007-09-18       Impact factor: 16.971

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  9 in total

1.  LINC00507 Is Specifically Expressed in the Primate Cortex and Has Age-Dependent Expression Patterns.

Authors:  James D Mills; Melanie Ward; Bei Jun Chen; Anand M Iyer; Eleonora Aronica; Michael Janitz
Journal:  J Mol Neurosci       Date:  2016-04-08       Impact factor: 3.444

Review 2.  Alternative splicing of lncRNAs in human diseases.

Authors:  Jiaxi Chen; Yawen Liu; Jingyu Min; Huizhi Wang; Feifan Li; Chunhui Xu; Aihua Gong; Min Xu
Journal:  Am J Cancer Res       Date:  2021-03-01       Impact factor: 6.166

Review 3.  Understanding the Role of lncRNAs in Nervous System Development.

Authors:  Brian S Clark; Seth Blackshaw
Journal:  Adv Exp Med Biol       Date:  2017       Impact factor: 2.622

Review 4.  The Antisense Transcriptome and the Human Brain.

Authors:  James D Mills; Bei Jun Chen; Uwe Ueberham; Thomas Arendt; Michael Janitz
Journal:  J Mol Neurosci       Date:  2015-12-23       Impact factor: 3.444

5.  Microarray Expression Profile of lncRNAs and mRNAs in Rats with Traumatic Brain Injury after A2B5+ Cell Transplantation.

Authors:  Qiang Lyu; Zi-Bin Zhang; Song-Jun Fu; Liu-Lin Xiong; Jing Liu; Ting-Hua Wang
Journal:  Cell Transplant       Date:  2017-10       Impact factor: 4.064

Review 6.  Long non-coding RNA in glioma: signaling pathways.

Authors:  Jia Shi; Bo Dong; Jiachao Cao; Yumin Mao; Wei Guan; Ya Peng; Suinuan Wang
Journal:  Oncotarget       Date:  2017-04-18

7.  lncRNA ROR promotes the progression of renal cell carcinoma through the miR‑206/VEGF axis.

Authors:  Jianguo Shi; Datian Zhang; Zhenhai Zhong; Wen Zhang
Journal:  Mol Med Rep       Date:  2019-09-02       Impact factor: 2.952

8.  [ARTICLE WITHDRAWN] Knockdown of Long Noncoding RNA LINC00152 Suppresses Cellular Proliferation and Invasion in Glioma Cells by Regulating miR-4775.

Authors:  Zhankun Zhu; Jinhua Dai; Yufeng Liao; Jianbo Ma; Wei Zhou
Journal:  Oncol Res       Date:  2017-08-11       Impact factor: 5.574

9.  Long Non-coding RNA LINC00320 Inhibits Tumorigenicity of Glioma Cells and Angiogenesis Through Downregulation of NFKB1-Mediated AQP9.

Authors:  Lisha Chang; Zhe Bian; Xin Xiong; Jian Liu; Dali Wang; Fuling Zhou; Jiang Zhang; Yunhe Zhang
Journal:  Front Cell Neurosci       Date:  2020-12-22       Impact factor: 5.505

  9 in total

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