Literature DB >> 25810307

Multiscale modelling in immunology: a review.

Antonio Cappuccio1, Paolo Tieri2, Filippo Castiglione3.   

Abstract

One of the greatest challenges in biomedicine is to get a unified view of observations made from the molecular up to the organism scale. Towards this goal, multiscale models have been highly instrumental in contexts such as the cardiovascular field, angiogenesis, neurosciences and tumour biology. More recently, such models are becoming an increasingly important resource to address immunological questions as well. Systematic mining of the literature in multiscale modelling led us to identify three main fields of immunological applications: host-virus interactions, inflammatory diseases and their treatment and development of multiscale simulation platforms for immunological research and for educational purposes. Here, we review the current developments in these directions, which illustrate that multiscale models can consistently integrate immunological data generated at several scales, and can be used to describe and optimize therapeutic treatments of complex immune diseases.
© The Author 2015. Published by Oxford University Press. For Permissions, please email: journals.permissions@oup.com.

Entities:  

Keywords:  computational methods; host–virus interaction; immunology; inflammation; mathematical modelling; multiscale modelling

Mesh:

Year:  2015        PMID: 25810307     DOI: 10.1093/bib/bbv012

Source DB:  PubMed          Journal:  Brief Bioinform        ISSN: 1467-5463            Impact factor:   11.622


  17 in total

1.  High-resolution computational modeling of immune responses in the gut.

Authors:  Meghna Verma; Josep Bassaganya-Riera; Andrew Leber; Nuria Tubau-Juni; Stefan Hoops; Vida Abedi; Xi Chen; Raquel Hontecillas
Journal:  Gigascience       Date:  2019-06-01       Impact factor: 6.524

2.  Modelling cell surface dynamics and cell-cell interactions using Cell Studio: a three-dimensional visualization tool based on gaming technology.

Authors:  Asaf Liberman; Matan Mussel; Danny Kario; David Sprinzak; Uri Nevo
Journal:  J R Soc Interface       Date:  2019-11-27       Impact factor: 4.118

3.  Multi-scale models of lung fibrosis.

Authors:  Julie Leonard-Duke; Stephanie Evans; Riley T Hannan; Thomas H Barker; Jason H T Bates; Catherine A Bonham; Bethany B Moore; Denise E Kirschner; Shayn M Peirce
Journal:  Matrix Biol       Date:  2020-05-11       Impact factor: 11.583

Review 4.  Multi-scale Modeling in Clinical Oncology: Opportunities and Barriers to Success.

Authors:  Thomas E Yankeelov; Gary An; Oliver Saut; E Georg Luebeck; Aleksander S Popel; Benjamin Ribba; Paolo Vicini; Xiaobo Zhou; Jared A Weis; Kaiming Ye; Guy M Genin
Journal:  Ann Biomed Eng       Date:  2016-07-06       Impact factor: 3.934

5.  IL-2 sensitivity and exogenous IL-2 concentration gradient tune the productive contact duration of CD8(+) T cell-APC: a multiscale modeling study.

Authors:  Xuefeng Gao; Christophe Arpin; Jacqueline Marvel; Sotiris A Prokopiou; Olivier Gandrillon; Fabien Crauste
Journal:  BMC Syst Biol       Date:  2016-08-17

6.  Statistical ensemble of gene regulatory networks of macrophage differentiation.

Authors:  Filippo Castiglione; Paolo Tieri; Alessandro Palma; Abdul Salam Jarrah
Journal:  BMC Bioinformatics       Date:  2016-12-22       Impact factor: 3.169

Review 7.  Modeling immune cell behavior across scales in cancer.

Authors:  Sahak Z Makaryan; Colin G Cess; Stacey D Finley
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2020-03-04

Review 8.  Integrative Computational Modeling of the Lymph Node Stromal Cell Landscape.

Authors:  Mario Novkovic; Lucas Onder; Hung-Wei Cheng; Gennady Bocharov; Burkhard Ludewig
Journal:  Front Immunol       Date:  2018-10-23       Impact factor: 7.561

9.  Cell studio: A platform for interactive, 3D graphical simulation of immunological processes.

Authors:  Asaf Liberman; Danny Kario; Matan Mussel; Jacob Brill; Kenneth Buetow; Sol Efroni; Uri Nevo
Journal:  APL Bioeng       Date:  2018-06-04

Review 10.  Mathematical Models for Immunology: Current State of the Art and Future Research Directions.

Authors:  Raluca Eftimie; Joseph J Gillard; Doreen A Cantrell
Journal:  Bull Math Biol       Date:  2016-10-06       Impact factor: 1.758

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