Literature DB >> 25810302

A Signal-Passing DNA-Strand-Exchange Mechanism for Active Self-Assembly of DNA Nanostructures.

Jennifer E Padilla1, Ruojie Sha, Martin Kristiansen, Junghuei Chen, Natasha Jonoska, Nadrian C Seeman.   

Abstract

DNA nanostructured tiles play an active role in their own self-assembly in the system described herein whereby they initiate a binding event that produces a cascading assembly process. We present DNA tiles that have a simple but powerful property: they respond to a binding event at one end of the tile by passing a signal across the tile to activate a binding site at the other end. This action allows sequential, virtually irreversible self-assembly of tiles and enables local communication during the self-assembly process. This localized signal-passing mechanism provides a new element of control for autonomous self-assembly of DNA nanostructures.
© 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  DNA structures; DNA tiles; nanotechnology; self-assembly; strand displacement

Mesh:

Substances:

Year:  2015        PMID: 25810302      PMCID: PMC4527968          DOI: 10.1002/anie.201500252

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  24 in total

1.  The flexibility of DNA double crossover molecules.

Authors:  Phiset Sa-Ardyen; Alexander V Vologodskii; Nadrian C Seeman
Journal:  Biophys J       Date:  2003-06       Impact factor: 4.033

2.  RNA used to control a DNA rotary nanomachine.

Authors:  Hong Zhong; Nadrian C Seeman
Journal:  Nano Lett       Date:  2006-12       Impact factor: 11.189

3.  Operation of a DNA robot arm inserted into a 2D DNA crystalline substrate.

Authors:  Baoquan Ding; Nadrian C Seeman
Journal:  Science       Date:  2006-12-08       Impact factor: 47.728

4.  Enzyme-free nucleic acid logic circuits.

Authors:  Georg Seelig; David Soloveichik; David Yu Zhang; Erik Winfree
Journal:  Science       Date:  2006-12-08       Impact factor: 47.728

5.  Programming biomolecular self-assembly pathways.

Authors:  Peng Yin; Harry M T Choi; Colby R Calvert; Niles A Pierce
Journal:  Nature       Date:  2008-01-17       Impact factor: 49.962

6.  Toward reliable algorithmic self-assembly of DNA tiles: a fixed-width cellular automaton pattern.

Authors:  Kenichi Fujibayashi; Rizal Hariadi; Sung Ha Park; Erik Winfree; Satoshi Murata
Journal:  Nano Lett       Date:  2007-12-28       Impact factor: 11.189

7.  Design and self-assembly of two-dimensional DNA crystals.

Authors:  E Winfree; F Liu; L A Wenzler; N C Seeman
Journal:  Nature       Date:  1998-08-06       Impact factor: 49.962

Review 8.  Nucleic acid based molecular devices.

Authors:  Yamuna Krishnan; Friedrich C Simmel
Journal:  Angew Chem Int Ed Engl       Date:  2011-03-28       Impact factor: 15.336

9.  Synchronization of two assembly processes to build responsive DNA nanostructures.

Authors:  Zhou Nie; Pengfei Wang; Cheng Tian; Chengde Mao
Journal:  Angew Chem Int Ed Engl       Date:  2014-06-24       Impact factor: 15.336

10.  Developmental self-assembly of a DNA tetrahedron.

Authors:  John P Sadowski; Colby R Calvert; David Yu Zhang; Niles A Pierce; Peng Yin
Journal:  ACS Nano       Date:  2014-04-11       Impact factor: 15.881

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  3 in total

1.  Dynamic Simulation of 1D Cellular Automata in the Active aTAM.

Authors:  Nataša Jonoska; Daria Karpenko; Shinnosuke Seki
Journal:  New Gener Comput       Date:  2015-07-25       Impact factor: 1.048

2.  Sequential self-assembly of DNA functionalized droplets.

Authors:  Yin Zhang; Angus McMullen; Lea-Laetitia Pontani; Xiaojin He; Ruojie Sha; Nadrian C Seeman; Jasna Brujic; Paul M Chaikin
Journal:  Nat Commun       Date:  2017-06-16       Impact factor: 14.919

3.  Constructing Controllable Logic Circuits Based on DNAzyme Activity.

Authors:  Fengjie Yang; Yuan Liu; Bin Wang; Changjun Zhou; Qiang Zhang
Journal:  Molecules       Date:  2019-11-15       Impact factor: 4.411

  3 in total

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