Literature DB >> 25807334

Comprehensive analysis of regulatory elements of the promoters of rice sulfate transporter gene family and functional characterization of OsSul1;1 promoter under different metal stress.

Smita Kumar1, Mehar Hasan Asif, Debasis Chakrabarty, Rudra Deo Tripathi, Rama Shanker Dubey, Prabodh Kumar Trivedi.   

Abstract

Adverse environmental conditions including heavy metal stress impose severe effects on the plant growth and development limiting productivity and yield. Studies demonstrated that changes in genome-wide expression modulate various biochemical processes and molecular components in response to heavy metal stress in plants. Some of the key components involved in such a regulation are the transcription initiation machinery, nucleotide sequence of promoters and presence of cis-acting elements. Therefore, identification of the putative cis-acting DNA sequences involved in gene regulation and functional characterization of promoters are important steps in understanding response of plants to heavy metal stress. In this study, comprehensive analysis of the proximal promoters of members of rice sulfate transporter gene family which is an essential component of stress response has been carried out. Analysis suggests presence of various common stress related cis-acting elements in the promoters of members of this gene family. In addition, transcriptional regulation of the arsenic-responsive high affinity sulfate transporter, OsSul1;1, has been studied through development of Arabidopsis transgenic lines expressing reporter gene encoding β-glucuronidase under the control of OsSul1;1 promoter. Analysis of the transgenic lines suggests differential response of the OsSul1;1 promoter to various heavy metals as well as other abiotic stresses.

Entities:  

Keywords:  Arabidopsis; cis-acting elements; heavy metals; proximal promoter; rice; sulfate transporter gene family; transcriptional regulation; transgenic plants

Mesh:

Substances:

Year:  2015        PMID: 25807334      PMCID: PMC4622619          DOI: 10.4161/15592324.2014.990843

Source DB:  PubMed          Journal:  Plant Signal Behav        ISSN: 1559-2316


  30 in total

1.  Differential response of oxidative stress and thiol metabolism in contrasting rice genotypes for arsenic tolerance.

Authors:  Preeti Tripathi; Aradhana Mishra; Sanjay Dwivedi; Debasis Chakrabarty; Prabodh K Trivedi; Rana Pratap Singh; Rudra Deo Tripathi
Journal:  Ecotoxicol Environ Saf       Date:  2012-02-05       Impact factor: 6.291

2.  Arsenic tolerances in rice (Oryza sativa) have a predominant role in transcriptional regulation of a set of genes including sulphur assimilation pathway and antioxidant system.

Authors:  Arti Rai; Preeti Tripathi; Sanjay Dwivedi; Sonali Dubey; Manju Shri; Smita Kumar; Pankaj Kumar Tripathi; Richa Dave; Amit Kumar; Ragini Singh; Bijan Adhikari; Manas Bag; Rudra Deo Tripathi; Prabodh K Trivedi; Debasis Chakrabarty; Rakesh Tuli
Journal:  Chemosphere       Date:  2010-11-13       Impact factor: 7.086

3.  Chimeric promoter mediates guard cell-specific gene expression in tobacco under water deficit.

Authors:  Jong-Kuk Na; James D Metzger
Journal:  Biotechnol Lett       Date:  2014-05-27       Impact factor: 2.461

Review 4.  Eukaryotic transcriptional dynamics: from single molecules to cell populations.

Authors:  Antoine Coulon; Carson C Chow; Robert H Singer; Daniel R Larson
Journal:  Nat Rev Genet       Date:  2013-07-09       Impact factor: 53.242

5.  Differential expression and alternative splicing of rice sulphate transporter family members regulate sulphur status during plant growth, development and stress conditions.

Authors:  Smita Kumar; Mehar Hasan Asif; Debasis Chakrabarty; Rudra Deo Tripathi; Prabodh Kumar Trivedi
Journal:  Funct Integr Genomics       Date:  2011-01-09       Impact factor: 3.410

6.  Phytochelatin-metal(loid) transport into vacuoles shows different substrate preferences in barley and Arabidopsis.

Authors:  Won-Yong Song; David G Mendoza-Cózatl; Youngsook Lee; Julian I Schroeder; Sang-Nag Ahn; Hyun-Sook Lee; Thomas Wicker; Enrico Martinoia
Journal:  Plant Cell Environ       Date:  2013-12-08       Impact factor: 7.228

Review 7.  Understanding plant responses to phosphorus starvation for improvement of plant tolerance to phosphorus deficiency by biotechnological approaches.

Authors:  Sukbong Ha; Lam-Son Tran
Journal:  Crit Rev Biotechnol       Date:  2013-04-16       Impact factor: 8.429

8.  Comparative transcriptome analysis of arsenate and arsenite stresses in rice seedlings.

Authors:  Debasis Chakrabarty; Prabodh Kumar Trivedi; Prashant Misra; Manish Tiwari; Manju Shri; Devesh Shukla; Smita Kumar; Arti Rai; Ashutosh Pandey; Deepti Nigam; Rudra Dev Tripathi; Rakesh Tuli
Journal:  Chemosphere       Date:  2008-11-08       Impact factor: 7.086

9.  Thiol metabolism play significant role during cadmium detoxification by Ceratophyllum demersum L.

Authors:  Seema Mishra; R D Tripathi; Sudhakar Srivastava; Sanjay Dwivedi; Prabodh Kumar Trivedi; O P Dhankher; A Khare
Journal:  Bioresour Technol       Date:  2008-12-16       Impact factor: 9.642

10.  MEME SUITE: tools for motif discovery and searching.

Authors:  Timothy L Bailey; Mikael Boden; Fabian A Buske; Martin Frith; Charles E Grant; Luca Clementi; Jingyuan Ren; Wilfred W Li; William S Noble
Journal:  Nucleic Acids Res       Date:  2009-05-20       Impact factor: 16.971

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  4 in total

Review 1.  Involvement of Small RNAs in Phosphorus and Sulfur Sensing, Signaling and Stress: Current Update.

Authors:  Smita Kumar; Saurabh Verma; Prabodh K Trivedi
Journal:  Front Plant Sci       Date:  2017-03-10       Impact factor: 5.753

2.  Functional Characterization of a Gene in Sedum alfredii Hance Resembling Rubber Elongation Factor Endowed with Functions Associated with Cadmium Tolerance.

Authors:  Mingying Liu; Wenming Qiu; Xuelian He; Liu Zheng; Xixi Song; Xiaojiao Han; Jing Jiang; Guirong Qiao; Jian Sang; Mingqing Liu; Renying Zhuo
Journal:  Front Plant Sci       Date:  2016-06-29       Impact factor: 5.753

Review 3.  Glutathione S-Transferases: Role in Combating Abiotic Stresses Including Arsenic Detoxification in Plants.

Authors:  Smita Kumar; Prabodh K Trivedi
Journal:  Front Plant Sci       Date:  2018-06-07       Impact factor: 5.753

4.  Transcriptomic analysis at organ and time scale reveals gene regulatory networks controlling the sulfate starvation response of Solanum lycopersicum.

Authors:  Javier Canales; Felipe Uribe; Carlos Henríquez-Valencia; Carlos Lovazzano; Joaquín Medina; Elena A Vidal
Journal:  BMC Plant Biol       Date:  2020-08-24       Impact factor: 4.215

  4 in total

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