Literature DB >> 18996570

Comparative transcriptome analysis of arsenate and arsenite stresses in rice seedlings.

Debasis Chakrabarty1, Prabodh Kumar Trivedi, Prashant Misra, Manish Tiwari, Manju Shri, Devesh Shukla, Smita Kumar, Arti Rai, Ashutosh Pandey, Deepti Nigam, Rudra Dev Tripathi, Rakesh Tuli.   

Abstract

The effect of arsenic (As) exposure on genome-wide expression was examined in rice (Oryza sativa L., ssp. Indica). A group of defense and stress-responsive genes, transporters, heat-shock proteins, metallothioneins, sulfate-metabolizing proteins, and regulatory genes showed differential expression in rice seedlings challenged with arsenate (AsV) and arsenite (AsIII). AsV stress led to upregulation or downregulation of an additional set of genes in comparison to AsIII. Differential expression of several genes that showed the highest contrast in a microarray analysis was validated by following the quantitative changes in the levels of individual transcripts following challenge with AsV, AsIII, Cd, Cr, and Pb. Most of the selected genes responded to challenge by heavy metals such as arsenic. However, expression of one of the cytochrome P450 genes (Os01g43740) in rice root was induced by AsV but not by other heavy metals. Similarly, one glutaredoxin (Os01g26912) is expressed specifically in the AsIII-treated shoot.

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Year:  2008        PMID: 18996570     DOI: 10.1016/j.chemosphere.2008.09.082

Source DB:  PubMed          Journal:  Chemosphere        ISSN: 0045-6535            Impact factor:   7.086


  61 in total

1.  Genome-wide identification and expression analysis of the mitogen-activated protein kinase gene family from banana suggest involvement of specific members in different stages of fruit ripening.

Authors:  Mehar Hasan Asif; Deepika Lakhwani; Sumya Pathak; Sweta Bhambhani; Sumit K Bag; Prabodh Kumar Trivedi
Journal:  Funct Integr Genomics       Date:  2013-11-26       Impact factor: 3.410

Review 2.  Understanding arsenic dynamics in agronomic systems to predict and prevent uptake by crop plants.

Authors:  Tracy Punshon; Brian P Jackson; Andrew A Meharg; Todd Warczack; Kirk Scheckel; Mary Lou Guerinot
Journal:  Sci Total Environ       Date:  2016-12-30       Impact factor: 7.963

Review 3.  The relative impact of toxic heavy metals (THMs) (arsenic (As), cadmium (Cd), chromium (Cr)(VI), mercury (Hg), and lead (Pb)) on the total environment: an overview.

Authors:  Zeeshanur Rahman; Ved Pal Singh
Journal:  Environ Monit Assess       Date:  2019-06-08       Impact factor: 2.513

4.  Selenium ameliorates arsenic induced oxidative stress through modulation of antioxidant enzymes and thiols in rice (Oryza sativa L.).

Authors:  Amit Kumar; Rana Pratap Singh; Pradyumna Kumar Singh; Surabhi Awasthi; Debasis Chakrabarty; Prabodh Kumar Trivedi; Rudra Deo Tripathi
Journal:  Ecotoxicology       Date:  2014-07-02       Impact factor: 2.823

5.  Comprehensive analysis of regulatory elements of the promoters of rice sulfate transporter gene family and functional characterization of OsSul1;1 promoter under different metal stress.

Authors:  Smita Kumar; Mehar Hasan Asif; Debasis Chakrabarty; Rudra Deo Tripathi; Rama Shanker Dubey; Prabodh Kumar Trivedi
Journal:  Plant Signal Behav       Date:  2015

6.  Oxidative injury and antioxidant enzymes regulation in arsenic-exposed seedlings of four Brassica napus L. cultivars.

Authors:  Muhammad A Farooq; Lan Li; Basharat Ali; Rafaqat A Gill; Jian Wang; Shafaqat Ali; Muhammad B Gill; Weijun Zhou
Journal:  Environ Sci Pollut Res Int       Date:  2015-03-11       Impact factor: 4.223

7.  Genome-wide identification of rice class I metallothionein gene: tissue expression patterns and induction in response to heavy metal stress.

Authors:  Neelam Gautam; Pankaj Kumar Verma; Shikha Verma; Rudra Deo Tripathi; Prabodh Kumar Trivedi; Bijan Adhikari; Debasis Chakrabarty
Journal:  Funct Integr Genomics       Date:  2012-10-10       Impact factor: 3.410

8.  Deciphering the non-coding RNA-level response to arsenic stress in rice (Oryza sativa).

Authors:  Zhonghai Tang; Min Xu; Hidetaka Ito; Jiahui Cai; Xiaoxia Ma; Jingping Qin; Dongliang Yu; Yijun Meng
Journal:  Plant Signal Behav       Date:  2019-06-12

9.  Heavy metals induce oxidative stress and genome-wide modulation in transcriptome of rice root.

Authors:  Sonali Dubey; Manju Shri; Prashant Misra; Deepika Lakhwani; Sumit Kumar Bag; Mehar H Asif; Prabodh Kumar Trivedi; Rudro Deo Tripathi; Debasis Chakrabarty
Journal:  Funct Integr Genomics       Date:  2014-02-20       Impact factor: 3.410

10.  Development of a sediment-contact test with rice for the assessment of sediment-bound pollutants.

Authors:  Alexandra Brinke; Sebastian Buchinger; Georg Reifferscheid; Roland Klein; Ute Feiler
Journal:  Environ Sci Pollut Res Int       Date:  2015-04-28       Impact factor: 4.223

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