Literature DB >> 25807068

The tail domain of lamin B1 is more strongly modulated by divalent cations than lamin A.

Sairaam Ganesh1, Zhao Qin, Stephen T Spagnol, Matthew T Biegler, Kelli A Coffey, Agnieszka Kalinowski, Markus J Buehler, Kris Noel Dahl.   

Abstract

The nucleoskeleton contains mainly nuclear intermediate filaments made of lamin proteins. Lamins provide nuclear structure and also play a role in various nuclear processes including signal transduction, transcription regulation and chromatin organization. The disparate functions of lamins may be related to the intrinsic disorder of the tail domains, which allows for altered and promiscuous binding. Here, we show modulation of lamin tail domain structures in the presence of divalent cations. We utilize changes in fluorescence of tryptophan residues within the Ig-fold flanked by disordered regions to experimentally measure protein thermodynamics. Using spectroscopy experiments and molecular dynamics simulations, we show that the tail domain of lamin B1 shows enhanced association with both Ca(2+) and Mg(2+) compared to the tail domain of lamin A. Binding curves show a similar KD between protein and ion (250-300 μM) for both proteins with both ions. However, we observe a maximum binding of ions to lamin B1 tail domain which is 2-3 times greater than that for lamin A tail domain by both experiment and simulation. Using simulations, we show that divalent ion association alters the Ig-fold by pinning flanking regions. With cells in culture, we observe altered lamin B1 organization in the presence of excess Mg(2+) more so than for lamin A. We suggest that the differential sensitivity to divalent cations contributes to the vastly different functionalities and binding of the 2 proteins.

Entities:  

Keywords:  GST, glutathione S-transferase; HFF, human foreskin fibroblasts; LA, lamin A; LA-TD, the tail domain of lamin A; LB1, lamin B1; LB1-TD, the tail domain of lamin B1; MD, molecular dynamics; PME, particle mesh Ewald; REMD, replica exchange molecular dynamics; TD, tail domain; intrinsically disordered proteins; lamin; molecular dynamics; nucleoskeleton; preLA, prelamin A; preLA-TD, the tail domain of prelamin A; trLA-TD, lamin A tail domain truncated to be the same length as lamin B tail domain; ΔI/Io, change in intensity normalized to initial intensity

Mesh:

Substances:

Year:  2015        PMID: 25807068      PMCID: PMC4615889          DOI: 10.1080/19491034.2015.1031436

Source DB:  PubMed          Journal:  Nucleus        ISSN: 1949-1034            Impact factor:   4.197


  31 in total

1.  Divalent cations crosslink vimentin intermediate filament tail domains to regulate network mechanics.

Authors:  Yi-Chia Lin; Chase P Broedersz; Amy C Rowat; Tatjana Wedig; Harald Herrmann; Frederick C Mackintosh; David A Weitz
Journal:  J Mol Biol       Date:  2010-05-04       Impact factor: 5.469

Review 2.  Intermediate filaments: from cell architecture to nanomechanics.

Authors:  Harald Herrmann; Harald Bär; Laurent Kreplak; Sergei V Strelkov; Ueli Aebi
Journal:  Nat Rev Mol Cell Biol       Date:  2007-07       Impact factor: 94.444

Review 3.  Nucleoplasmic lamins and their interaction partners, LAP2alpha, Rb, and BAF, in transcriptional regulation.

Authors:  Daniela Dorner; Josef Gotzmann; Roland Foisner
Journal:  FEBS J       Date:  2007-03       Impact factor: 5.542

4.  The A- and B-type nuclear lamin networks: microdomains involved in chromatin organization and transcription.

Authors:  Takeshi Shimi; Katrin Pfleghaar; Shin-ichiro Kojima; Chan-Gi Pack; Irina Solovei; Anne E Goldman; Stephen A Adam; Dale K Shumaker; Masataka Kinjo; Thomas Cremer; Robert D Goldman
Journal:  Genes Dev       Date:  2008-12-15       Impact factor: 11.361

5.  Characterization of the head-to-tail overlap complexes formed by human lamin A, B1 and B2 "half-minilamin" dimers.

Authors:  Larisa E Kapinos; Jens Schumacher; Norbert Mücke; Gia Machaidze; Peter Burkhard; Ueli Aebi; Sergei V Strelkov; Harald Herrmann
Journal:  J Mol Biol       Date:  2009-12-07       Impact factor: 5.469

6.  Comparative protein structure modeling using MODELLER.

Authors:  Narayanan Eswar; Ben Webb; Marc A Marti-Renom; M S Madhusudhan; David Eramian; Min-Yi Shen; Ursula Pieper; Andrej Sali
Journal:  Curr Protoc Protein Sci       Date:  2007-11

7.  Protein structure analysis online.

Authors:  Maria A Miteva; Emil Alexov; Bruno O Villoutreix
Journal:  Curr Protoc Protein Sci       Date:  2007-11

Review 8.  Prelamin A, Zmpste24, misshapen cell nuclei, and progeria--new evidence suggesting that protein farnesylation could be important for disease pathogenesis.

Authors:  Stephen G Young; Loren G Fong; Susan Michaelis
Journal:  J Lipid Res       Date:  2005-10-05       Impact factor: 5.922

9.  Lamin A/C expression is a marker of mouse and human embryonic stem cell differentiation.

Authors:  Dan Constantinescu; Heather L Gray; Paul J Sammak; Gerald P Schatten; Antonei B Csoka
Journal:  Stem Cells       Date:  2005-09-22       Impact factor: 6.277

Review 10.  Prelamin A farnesylation and progeroid syndromes.

Authors:  Stephen G Young; Margarita Meta; Shao H Yang; Loren G Fong
Journal:  J Biol Chem       Date:  2006-11-07       Impact factor: 5.157

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  1 in total

Review 1.  Telomere Homeostasis: Interplay with Magnesium.

Authors:  Donogh Maguire; Ognian Neytchev; Dinesh Talwar; Donald McMillan; Paul G Shiels
Journal:  Int J Mol Sci       Date:  2018-01-05       Impact factor: 5.923

  1 in total

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