Literature DB >> 25796366

Structure and function insights into the NuRD chromatin remodeling complex.

Morgan P Torchy1, Ali Hamiche, Bruno P Klaholz.   

Abstract

Transcription regulation through chromatin compaction and decompaction is regulated through various chromatin-remodeling complexes such as nucleosome remodeling and histone deacetylation (NuRD) complex. NuRD is a 1 MDa multi-subunit protein complex which comprises many different subunits, among which histone deacetylases HDAC1/2, ATP-dependent remodeling enzymes CHD3/4, histone chaperones RbAp46/48, CpG-binding proteins MBD2/3, the GATAD2a (p66α) and/or GATAD2b (p66β) and specific DNA-binding proteins MTA1/2/3. Here, we review the currently known crystal and NMR structures of these subunits, the functional data and their relevance for biomedical research considering the implication of NuRD subunits in cancer and various other diseases. The complexity of this macromolecular assembly, and its poorly understood mode of interaction with the nucleosome, the repeating unit of chromatin, illustrate that this complex is a major challenge for structure-function relationship studies which will be tackled best by an integrated biology approach.

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Year:  2015        PMID: 25796366     DOI: 10.1007/s00018-015-1880-8

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  157 in total

1.  Chromatin assembly factor 1 is essential and couples chromatin assembly to DNA replication in vivo.

Authors:  Maarten Hoek; Bruce Stillman
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-30       Impact factor: 11.205

2.  Native E2F/RBF complexes contain Myb-interacting proteins and repress transcription of developmentally controlled E2F target genes.

Authors:  Michael Korenjak; Barbie Taylor-Harding; Ulrich K Binné; John S Satterlee; Olivier Stevaux; Rein Aasland; Helen White-Cooper; Nick Dyson; Alexander Brehm
Journal:  Cell       Date:  2004-10-15       Impact factor: 41.582

3.  MTA3 and the Mi-2/NuRD complex regulate cell fate during B lymphocyte differentiation.

Authors:  Naoyuki Fujita; David L Jaye; Cissy Geigerman; Adil Akyildiz; Myesha R Mooney; Jeremy M Boss; Paul A Wade
Journal:  Cell       Date:  2004-10-01       Impact factor: 41.582

4.  Overlapping functions of Hdac1 and Hdac2 in cell cycle regulation and haematopoiesis.

Authors:  Roel H Wilting; Eva Yanover; Marinus R Heideman; Heinz Jacobs; James Horner; Jaco van der Torre; Ronald A DePinho; Jan-Hermen Dannenberg
Journal:  EMBO J       Date:  2010-06-22       Impact factor: 11.598

5.  KAP-1 phosphorylation regulates CHD3 nucleosome remodeling during the DNA double-strand break response.

Authors:  Aaron A Goodarzi; Thomas Kurka; Penelope A Jeggo
Journal:  Nat Struct Mol Biol       Date:  2011-06-05       Impact factor: 15.369

6.  Nucleosomal DNA regulates the core-histone-binding subunit of the human Hat1 acetyltransferase.

Authors:  A Verreault; P D Kaufman; R Kobayashi; B Stillman
Journal:  Curr Biol       Date:  1998-01-15       Impact factor: 10.834

7.  Structural snapshots of human HDAC8 provide insights into the class I histone deacetylases.

Authors:  John R Somoza; Robert J Skene; Bradley A Katz; Clifford Mol; Joseph D Ho; Andy J Jennings; Christine Luong; Andrew Arvai; Joseph J Buggy; Ellen Chi; Jie Tang; Bi-Ching Sang; Erik Verner; Robert Wynands; Ellen M Leahy; Douglas R Dougan; Gyorgy Snell; Marc Navre; Mark W Knuth; Ronald V Swanson; Duncan E McRee; Leslie W Tari
Journal:  Structure       Date:  2004-07       Impact factor: 5.006

8.  Different EZH2-containing complexes target methylation of histone H1 or nucleosomal histone H3.

Authors:  Andrei Kuzmichev; Thomas Jenuwein; Paul Tempst; Danny Reinberg
Journal:  Mol Cell       Date:  2004-04-23       Impact factor: 17.970

9.  Genome-wide binding map of the histone deacetylase Rpd3 in yeast.

Authors:  Siavash K Kurdistani; Daniel Robyr; Saeed Tavazoie; Michael Grunstein
Journal:  Nat Genet       Date:  2002-06-24       Impact factor: 38.330

10.  HDAC1 regulates pluripotency and lineage specific transcriptional networks in embryonic and trophoblast stem cells.

Authors:  Benjamin L Kidder; Stephen Palmer
Journal:  Nucleic Acids Res       Date:  2011-12-10       Impact factor: 16.971

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  82 in total

1.  The Epstein-Barr Virus BMRF1 Protein Activates Transcription and Inhibits the DNA Damage Response by Binding NuRD.

Authors:  Samuel G Salamun; Justine Sitz; Carlos F De La Cruz-Herrera; Jaime Yockteng-Melgar; Edyta Marcon; Jack Greenblatt; Amelie Fradet-Turcotte; Lori Frappier
Journal:  J Virol       Date:  2019-10-29       Impact factor: 5.103

2.  Human Adenovirus Infection Causes Cellular E3 Ubiquitin Ligase MKRN1 Degradation Involving the Viral Core Protein pVII.

Authors:  Raviteja Inturi; Kwangchol Mun; Katrin Singethan; Sabrina Schreiner; Tanel Punga
Journal:  J Virol       Date:  2018-01-17       Impact factor: 5.103

3.  SHREC Silences Heterochromatin via Distinct Remodeling and Deacetylation Modules.

Authors:  Godwin Job; Christiane Brugger; Tao Xu; Brandon R Lowe; Yvan Pfister; Chunxu Qu; Sreenath Shanker; José I Baños Sanz; Janet F Partridge; Thomas Schalch
Journal:  Mol Cell       Date:  2016-04-21       Impact factor: 17.970

Review 4.  The Chromodomain Helicase DNA-Binding Chromatin Remodelers: Family Traits that Protect from and Promote Cancer.

Authors:  Alea A Mills
Journal:  Cold Spring Harb Perspect Med       Date:  2017-04-03       Impact factor: 6.915

Review 5.  Long non-coding RNAs: the tentacles of chromatin remodeler complexes.

Authors:  Audrey Vincent; Isabelle Van Seuningen; Bernadette Neve; Nicolas Jonckheere
Journal:  Cell Mol Life Sci       Date:  2020-10-01       Impact factor: 9.261

6.  The BRD3 ET domain recognizes a short peptide motif through a mechanism that is conserved across chromatin remodelers and transcriptional regulators.

Authors:  Dorothy C C Wai; Taylor N Szyszka; Amy E Campbell; Cherry Kwong; Lorna E Wilkinson-White; Ana P G Silva; Jason K K Low; Ann H Kwan; Roland Gamsjaeger; James D Chalmers; Wayne M Patrick; Bin Lu; Christopher R Vakoc; Gerd A Blobel; Joel P Mackay
Journal:  J Biol Chem       Date:  2018-03-22       Impact factor: 5.157

7.  GATAD2B Gene Microdeletion Causing Intellectual Disability Autosomal Dominant Type 18: Case Report and Review of the Literature.

Authors:  Milana Trubnykova; Jeny Bazalar Montoya; Jorge La Serna-Infantes; Flor Vásquez Sotomayor; María Del Carmen Castro Mujica; Hugo Hernán Abarca Barriga
Journal:  Mol Syndromol       Date:  2019-04-16

Review 8.  Epigenetic Changes in Diabetes and Cardiovascular Risk.

Authors:  Samuel T Keating; Jorge Plutzky; Assam El-Osta
Journal:  Circ Res       Date:  2016-05-27       Impact factor: 17.367

9.  CHD4 Is a Peripheral Component of the Nucleosome Remodeling and Deacetylase Complex.

Authors:  Jason K K Low; Sarah R Webb; Ana P G Silva; Hinnerk Saathoff; Daniel P Ryan; Mario Torrado; Mattias Brofelth; Benjamin L Parker; Nicholas E Shepherd; Joel P Mackay
Journal:  J Biol Chem       Date:  2016-05-27       Impact factor: 5.157

10.  Transcription Factor hDREF Is a Novel SUMO E3 Ligase of Mi2α.

Authors:  Daisuke Yamashita; Takanobu Moriuchi; Takashi Osumi; Fumiko Hirose
Journal:  J Biol Chem       Date:  2016-04-11       Impact factor: 5.157

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