Literature DB >> 25793835

Molecular dynamics with on-the-fly machine learning of quantum-mechanical forces.

Zhenwei Li1, James R Kermode1,2, Alessandro De Vita1,3.   

Abstract

We present a molecular dynamics scheme which combines first-principles and machine-learning (ML) techniques in a single information-efficient approach. Forces on atoms are either predicted by Bayesian inference or, if necessary, computed by on-the-fly quantum-mechanical (QM) calculations and added to a growing ML database, whose completeness is, thus, never required. As a result, the scheme is accurate and general, while progressively fewer QM calls are needed when a new chemical process is encountered for the second and subsequent times, as demonstrated by tests on crystalline and molten silicon.

Entities:  

Year:  2015        PMID: 25793835     DOI: 10.1103/PhysRevLett.114.096405

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  49 in total

1.  Multiple Time-Step Dual-Hamiltonian Hybrid Molecular Dynamics - Monte Carlo Canonical Propagation Algorithm.

Authors:  Yunjie Chen; Seyit Kale; Jonathan Weare; Aaron R Dinner; Benoît Roux
Journal:  J Chem Theory Comput       Date:  2016-03-25       Impact factor: 6.006

Review 2.  Molecular Dynamics Simulations of Membrane Permeability.

Authors:  Richard M Venable; Andreas Krämer; Richard W Pastor
Journal:  Chem Rev       Date:  2019-02-12       Impact factor: 60.622

Review 3.  Whole-Cell Models and Simulations in Molecular Detail.

Authors:  Michael Feig; Yuji Sugita
Journal:  Annu Rev Cell Dev Biol       Date:  2019-07-12       Impact factor: 13.827

4.  Internal force corrections with machine learning for quantum mechanics/molecular mechanics simulations.

Authors:  Jingheng Wu; Lin Shen; Weitao Yang
Journal:  J Chem Phys       Date:  2017-10-28       Impact factor: 3.488

5.  Molecular Dynamics Simulations with Quantum Mechanics/Molecular Mechanics and Adaptive Neural Networks.

Authors:  Lin Shen; Weitao Yang
Journal:  J Chem Theory Comput       Date:  2018-02-26       Impact factor: 6.006

6.  Solvation Free Energy Calculations with Quantum Mechanics/Molecular Mechanics and Machine Learning Models.

Authors:  Pan Zhang; Lin Shen; Weitao Yang
Journal:  J Phys Chem B       Date:  2019-01-15       Impact factor: 2.991

7.  Multiscale Quantum Mechanics/Molecular Mechanics Simulations with Neural Networks.

Authors:  Lin Shen; Jingheng Wu; Weitao Yang
Journal:  J Chem Theory Comput       Date:  2016-09-06       Impact factor: 6.006

8.  Machine Learning for Electronically Excited States of Molecules.

Authors:  Julia Westermayr; Philipp Marquetand
Journal:  Chem Rev       Date:  2020-11-19       Impact factor: 60.622

9.  Bypassing the Kohn-Sham equations with machine learning.

Authors:  Felix Brockherde; Leslie Vogt; Li Li; Mark E Tuckerman; Kieron Burke; Klaus-Robert Müller
Journal:  Nat Commun       Date:  2017-10-11       Impact factor: 14.919

Review 10.  Towards operando computational modeling in heterogeneous catalysis.

Authors:  Lukáš Grajciar; Christopher J Heard; Anton A Bondarenko; Mikhail V Polynski; Jittima Meeprasert; Evgeny A Pidko; Petr Nachtigall
Journal:  Chem Soc Rev       Date:  2018-11-12       Impact factor: 54.564

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