Literature DB >> 25775280

Genome-wide association study identifies a new susceptibility locus for cleft lip with or without a cleft palate.

Yimin Sun1, Yongqing Huang2, Aihua Yin3, Yongchu Pan4, Yirui Wang5, Cheng Wang6, Yong Du2, Meilin Wang7, Feifei Lan3, Zhibin Hu6, Guoqing Wang8, Min Jiang2, Junqing Ma9, Xiaozhuang Zhang10, Hongxia Ma6, Jian Ma2, Weibing Zhang9, Qun Huang11, Zhongwei Zhou2, Lan Ma9, Yadi Li2, Hongbing Jiang12, Lan Xie13, Yuyang Jiang14, Bing Shi15, Jing Cheng5, Hongbing Shen6, Lin Wang4, Yinxue Yang2.   

Abstract

Nonsyndromic cleft lip with or without a cleft palate (NSCL/P) is among the most common human congenital birth defects and imposes a substantial physical and financial burden on affected individuals. Here, we conduct a case-control-based GWAS followed by two rounds of replication; we include six independent cohorts from China to elucidate the genetic architecture of NSCL/P in Chinese populations. Using this combined analysis, we identify a new locus at 16p13.3 associated with NSCL/P: rs8049367 between CREBBP and ADCY9 (odds ratio=0.74, P=8.98 × 10(-12)). We confirm that the reported loci at 1q32.2, 10q25.3, 17p13.1 and 20q12 are also involved in NSCL/P development in Chinese populations. Our results provide additional evidence that the rs2235371-related haplotype at 1q32.2 could play a more important role than the previously identified causal variant rs642961 in Chinese populations. These findings provide information on the genetic basis and mechanisms of NSCL/P.

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Year:  2015        PMID: 25775280     DOI: 10.1038/ncomms7414

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  66 in total

1.  Six2 regulates Pax9 expression, palatogenesis and craniofacial bone formation.

Authors:  Yan Yan Sweat; Mason Sweat; Maurisa Mansaray; Huojun Cao; Steven Eliason; Waisu L Adeyemo; Lord J J Gowans; Mekonen A Eshete; Deepti Anand; Camille Chalkley; Irfan Saadi; Salil A Lachke; Azeez Butali; Brad A Amendt
Journal:  Dev Biol       Date:  2019-11-23       Impact factor: 3.582

2.  Gene-gene interaction of single nucleotide polymorphisms in 16p13.3 may contribute to the risk of non-syndromic cleft lip with or without cleft palate in Chinese case-parent trios.

Authors:  Dongjing Liu; Hong Wang; Holger Schwender; Mary L Marazita; Zhuqing Wang; Yuan Yuan; Ping Wang; Kung Yee Liang; Yah Huei Wu-Chou; Mengying Wang; Bing Shi; Hongping Zhu; Tao Wu; Terri H Beaty
Journal:  Am J Med Genet A       Date:  2017-04-12       Impact factor: 2.802

Review 3.  Genetics and signaling mechanisms of orofacial clefts.

Authors:  Kurt Reynolds; Shuwen Zhang; Bo Sun; Michael A Garland; Yu Ji; Chengji J Zhou
Journal:  Birth Defects Res       Date:  2020-07-15       Impact factor: 2.344

4.  A Population-Based Study of Effects of Genetic Loci on Orofacial Clefts.

Authors:  L M Moreno Uribe; T Fomina; R G Munger; P A Romitti; M M Jenkins; H K Gjessing; M Gjerdevik; K Christensen; A J Wilcox; J C Murray; R T Lie; G L Wehby
Journal:  J Dent Res       Date:  2017-06-29       Impact factor: 6.116

5.  Genetic factors define CPO and CLO subtypes of nonsyndromicorofacial cleft.

Authors:  Lulin Huang; Zhonglin Jia; Yi Shi; Qin Du; Jiayu Shi; Ziyan Wang; Yandong Mou; Qingwei Wang; Bihe Zhang; Qing Wang; Shi Ma; He Lin; Shijun Duan; Bin Yin; Yansong Lin; Yiru Wang; Dan Jiang; Fang Hao; Lin Zhang; Haixin Wang; Suyuan Jiang; Huijuan Xu; Chengwei Yang; Chenghao Li; Jingtao Li; Bing Shi; Zhenglin Yang
Journal:  PLoS Genet       Date:  2019-10-14       Impact factor: 5.917

6.  Sequencing the GRHL3 Coding Region Reveals Rare Truncating Mutations and a Common Susceptibility Variant for Nonsyndromic Cleft Palate.

Authors:  Elisabeth Mangold; Anne C Böhmer; Nina Ishorst; Ann-Kathrin Hoebel; Pinar Gültepe; Hannah Schuenke; Johanna Klamt; Andrea Hofmann; Lina Gölz; Ruth Raff; Peter Tessmann; Stefanie Nowak; Heiko Reutter; Alexander Hemprich; Thomas Kreusch; Franz-Josef Kramer; Bert Braumann; Rudolf Reich; Gül Schmidt; Andreas Jäger; Rudolf Reiter; Sibylle Brosch; Janis Stavusis; Miho Ishida; Rimante Seselgyte; Gudrun E Moore; Markus M Nöthen; Guntram Borck; Khalid A Aldhorae; Baiba Lace; Philip Stanier; Michael Knapp; Kerstin U Ludwig
Journal:  Am J Hum Genet       Date:  2016-03-24       Impact factor: 11.025

7.  Genome-wide interaction studies identify sex-specific risk alleles for nonsyndromic orofacial clefts.

Authors:  Jenna C Carlson; Nichole L Nidey; Azeez Butali; Carmen J Buxo; Kaare Christensen; Frederic W-D Deleyiannis; Jacqueline T Hecht; L Leigh Field; Lina M Moreno-Uribe; Ieda M Orioli; Fernando A Poletta; Carmencita Padilla; Alexandre R Vieira; Seth M Weinberg; George L Wehby; Eleanor Feingold; Jeffrey C Murray; Mary L Marazita; Elizabeth J Leslie
Journal:  Genet Epidemiol       Date:  2018-09-11       Impact factor: 2.135

8.  Gene-Gene Interactions among SPRYs for Nonsyndromic Cleft Lip/Palate.

Authors:  R Zhou; M Wang; W Li; S Wang; Z Zhou; J Li; T Wu; H Zhu; T H Beaty
Journal:  J Dent Res       Date:  2018-10-01       Impact factor: 6.116

9.  Genomic analyses in African populations identify novel risk loci for cleft palate.

Authors:  Azeez Butali; Peter A Mossey; Wasiu L Adeyemo; Mekonen A Eshete; Lord J J Gowans; Tamara D Busch; Deepti Jain; Wenjie Yu; Liu Huan; Cecelia A Laurie; Cathy C Laurie; Sarah Nelson; Mary Li; Pedro A Sanchez-Lara; William P Magee; Kathleen S Magee; Allyn Auslander; Frederick Brindopke; Denise M Kay; Michele Caggana; Paul A Romitti; James L Mills; Rosemary Audu; Chika Onwuamah; Ganiyu O Oseni; Arwa Owais; Olutayo James; Peter B Olaitan; Babatunde S Aregbesola; Ramat O Braimah; Fadekemi O Oginni; Ayodeji O Oladele; Saidu A Bello; Jennifer Rhodes; Rita Shiang; Peter Donkor; Solomon Obiri-Yeboah; Fareed Kow Nanse Arthur; Peter Twumasi; Pius Agbenorku; Gyikua Plange-Rhule; Alexander Acheampong Oti; Olugbenga M Ogunlewe; Afisu A Oladega; Adegbayi A Adekunle; Akinwunmi O Erinoso; Olatunbosun O Adamson; Abosede A Elufowoju; Oluwanifemi I Ayelomi; Taiye Hailu; Abiye Hailu; Yohannes Demissie; Miliard Derebew; Steve Eliason; Miguel Romero-Bustillous; Cynthia Lo; James Park; Shaan Desai; Muiawa Mohammed; Firke Abate; Lukman O Abdur-Rahman; Deepti Anand; Irfaan Saadi; Abimibola V Oladugba; Salil A Lachke; Brad A Amendt; Charles N Rotimi; Mary L Marazita; Robert A Cornell; Jeffrey C Murray; Adebowale A Adeyemo
Journal:  Hum Mol Genet       Date:  2019-03-15       Impact factor: 6.150

10.  Genome-wide Analyses Identify a Novel Risk Locus for Nonsyndromic Cleft Palate.

Authors:  M He; X Zuo; H Liu; W Wang; Y Zhang; Y Fu; Q Zhen; Y Yu; Y Pan; C Qin; B Li; R Yang; J Wu; Z Huang; H Ge; H Wu; Q Xu; Y Zuo; W Chen; Y Qin; Z Liu; S Chen; H Zhang; F Zhou; H Yan; Y Yu; L Yong; G Chen; B Liang; R A Cornell; L Zong; L Wang; D Zou; L Sun; Z Bian
Journal:  J Dent Res       Date:  2020-08-06       Impact factor: 6.116

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