Literature DB >> 25774541

A computationally efficient method for incorporating spike waveform information into decoding algorithms.

Valérie Ventura1, Sonia Todorova.   

Abstract

Spike-based brain-computer interfaces (BCIs) have the potential to restore motor ability to people with paralysis and amputation, and have shown impressive performance in the lab. To transition BCI devices from the lab to the clinic, decoding must proceed automatically and in real time, which prohibits the use of algorithms that are computationally intensive or require manual tweaking. A common choice is to avoid spike sorting and treat the signal on each electrode as if it came from a single neuron, which is fast, easy, and therefore desirable for clinical use. But this approach ignores the kinematic information provided by individual neurons recorded on the same electrode. The contribution of this letter is a linear decoding model that extracts kinematic information from individual neurons without spike-sorting the electrode signals. The method relies on modeling sample averages of waveform features as functions of kinematics, which is automatic and requires minimal data storage and computation. In offline reconstruction of arm trajectories of a nonhuman primate performing reaching tasks, the proposed method performs as well as decoders based on expertly manually and automatically sorted spikes.

Entities:  

Mesh:

Year:  2015        PMID: 25774541      PMCID: PMC4884017          DOI: 10.1162/NECO_a_00731

Source DB:  PubMed          Journal:  Neural Comput        ISSN: 0899-7667            Impact factor:   2.026


  17 in total

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Authors:  George W Fraser; Andrew B Schwartz
Journal:  J Neurophysiol       Date:  2011-12-21       Impact factor: 2.714

2.  Bayesian population decoding of motor cortical activity using a Kalman filter.

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Review 3.  Useful signals from motor cortex.

Authors:  Andrew B Schwartz
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4.  Multichannel electrophysiological spike sorting via joint dictionary learning and mixture modeling.

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Journal:  IEEE Trans Biomed Eng       Date:  2013-07-30       Impact factor: 4.538

5.  Control of a brain-computer interface without spike sorting.

Authors:  George W Fraser; Steven M Chase; Andrew Whitford; Andrew B Schwartz
Journal:  J Neural Eng       Date:  2009-09-01       Impact factor: 5.379

6.  Vector reconstruction from firing rates.

Authors:  E Salinas; L F Abbott
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7.  Decoding visual information from a population of retinal ganglion cells.

Authors:  D K Warland; P Reinagel; M Meister
Journal:  J Neurophysiol       Date:  1997-11       Impact factor: 2.714

8.  To sort or not to sort: the impact of spike-sorting on neural decoding performance.

Authors:  Sonia Todorova; Patrick Sadtler; Aaron Batista; Steven Chase; Valérie Ventura
Journal:  J Neural Eng       Date:  2014-08-01       Impact factor: 5.379

9.  Bayesian decoding using unsorted spikes in the rat hippocampus.

Authors:  Fabian Kloosterman; Stuart P Layton; Zhe Chen; Matthew A Wilson
Journal:  J Neurophysiol       Date:  2013-10-02       Impact factor: 2.714

10.  Automatic spike sorting using tuning information.

Authors:  Valérie Ventura
Journal:  Neural Comput       Date:  2009-09       Impact factor: 2.026

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  3 in total

1.  Real-Time Readout of Large-Scale Unsorted Neural Ensemble Place Codes.

Authors:  Sile Hu; Davide Ciliberti; Andres D Grosmark; Frédéric Michon; Daoyun Ji; Hector Penagos; György Buzsáki; Matthew A Wilson; Fabian Kloosterman; Zhe Chen
Journal:  Cell Rep       Date:  2018-12-04       Impact factor: 9.423

2.  A neural network for online spike classification that improves decoding accuracy.

Authors:  Deepa Issar; Ryan C Williamson; Sanjeev B Khanna; Matthew A Smith
Journal:  J Neurophysiol       Date:  2020-02-26       Impact factor: 2.714

3.  Sums of Spike Waveform Features for Motor Decoding.

Authors:  Jie Li; Zheng Li
Journal:  Front Neurosci       Date:  2017-07-18       Impact factor: 4.677

  3 in total

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