Literature DB >> 25771489

Non-equilibrium conformational dynamics in the function of molecular chaperones.

Alessandro Barducci1, Paolo De Los Rios2.   

Abstract

Why do chaperones need ATP hydrolysis to help proteins reach their native, functional states? In this review, we highlight the most recent experimental and theoretical evidences suggesting that ATP hydrolysis allows molecular chaperones to escape the bounds imposed by equilibrium thermodynamics. We argue here that energy consumption must be fully taken into account to understand the mechanism of these intrinsically non-equilibrium machines and we propose a novel perspective in the way the relation between function and ATP hydrolysis is viewed.
Copyright © 2015 Elsevier Ltd. All rights reserved.

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Year:  2015        PMID: 25771489     DOI: 10.1016/j.sbi.2015.02.008

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  9 in total

1.  Thermodynamic Bounds on the Ultra- and Infra-affinity of Hsp70 for Its Substrates.

Authors:  Basile Nguyen; David Hartich; Udo Seifert; Paolo De Los Rios
Journal:  Biophys J       Date:  2017-07-25       Impact factor: 4.033

2.  Molecular chaperones maximize the native state yield on biological times by driving substrates out of equilibrium.

Authors:  Shaon Chakrabarti; Changbong Hyeon; Xiang Ye; George H Lorimer; D Thirumalai
Journal:  Proc Natl Acad Sci U S A       Date:  2017-12-07       Impact factor: 11.205

3.  Efficient manipulation and generation of Kirchhoff polynomials for the analysis of non-equilibrium biochemical reaction networks.

Authors:  Pencho Yordanov; Jörg Stelling
Journal:  J R Soc Interface       Date:  2020-04-22       Impact factor: 4.118

Review 4.  Large Chaperone Complexes Through the Lens of Nuclear Magnetic Resonance Spectroscopy.

Authors:  Theodoros K Karamanos; G Marius Clore
Journal:  Annu Rev Biophys       Date:  2022-01-19       Impact factor: 19.763

5.  Efficient conversion of chemical energy into mechanical work by Hsp70 chaperones.

Authors:  Salvatore Assenza; Alberto Stefano Sassi; Ruth Kellner; Benjamin Schuler; Paolo De Los Rios; Alessandro Barducci
Journal:  Elife       Date:  2019-12-17       Impact factor: 8.140

6.  Energy-dependent protein folding: modeling how a protein folding machine may work.

Authors:  Harutyun Sahakyan; Karen Nazaryan; Arcady Mushegian; Irina Sorokina
Journal:  F1000Res       Date:  2021-01-05

Review 7.  Is Protein Folding a Thermodynamically Unfavorable, Active, Energy-Dependent Process?

Authors:  Irina Sorokina; Arcady R Mushegian; Eugene V Koonin
Journal:  Int J Mol Sci       Date:  2022-01-04       Impact factor: 5.923

8.  Biochemical Convergence of Mitochondrial Hsp70 System Specialized in Iron-Sulfur Cluster Biogenesis.

Authors:  Malgorzata Kleczewska; Aneta Grabinska; Marcin Jelen; Milena Stolarska; Brenda Schilke; Jaroslaw Marszalek; Elizabeth A Craig; Rafal Dutkiewicz
Journal:  Int J Mol Sci       Date:  2020-05-08       Impact factor: 5.923

9.  Cochaperones enable Hsp70 to use ATP energy to stabilize native proteins out of the folding equilibrium.

Authors:  Huafeng Xu
Journal:  Sci Rep       Date:  2018-09-04       Impact factor: 4.379

  9 in total

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