Literature DB >> 25771099

FamLinkX - implementation of a general model for likelihood computations for X-chromosomal marker data.

Daniel Kling1, Barbara Dell'Amico2, Andreas O Tillmar3.   

Abstract

The use of genetic markers located on the X chromosome has seen a significant increase in the last years and their utility has been well studied. This paper describes the software FamLinkX, freely available at http://www.famlink.se, implementing a new algorithm for likelihood computations accounting for linkage, linkage disequilibrium and mutations. It is obvious that such software is sought for among forensic users as more and more X-chromosomal markers become available. We provide some simulated examples demonstrating the utility of the implementation as well as its application in forensic casework. Though algebraic derivations are generally unfeasible, the paper outlines some theoretical considerations and provides a discussion on the validation of the software. The focus of this paper is to compare the software to existing methods in a forensic setting, perform a validation study as well as to provide an idea of the discriminatory power for X-chromosomal markers.
Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

Keywords:  FamLinkX; Linkage; Linkage disequilibrium; Mutations; X chromosome

Mesh:

Substances:

Year:  2015        PMID: 25771099     DOI: 10.1016/j.fsigen.2015.02.007

Source DB:  PubMed          Journal:  Forensic Sci Int Genet        ISSN: 1872-4973            Impact factor:   4.882


  7 in total

1.  Mixtures with relatives and linked markers.

Authors:  Guro Dørum; Daniel Kling; Andreas Tillmar; Magnus Dehli Vigeland; Thore Egeland
Journal:  Int J Legal Med       Date:  2015-11-27       Impact factor: 2.686

2.  Genetic polymorphisms and mutation rates of 16 X-STRs in a Han Chinese population of Beijing and application examples in second-degree kinship cases.

Authors:  Man Chen; He Ren; Zhiyong Liu; Jing Zhao; Chong Chen; Yan Shi; Li Jia; Feng Cheng; Tong Chen; Qingwei Fan; Yaran Yang; Yacheng Liu; Gengqian Zhang; Jiangwei Yan
Journal:  Int J Legal Med       Date:  2019-04-01       Impact factor: 2.686

3.  Combined effects of multiple linked loci on pairwise sibling tests.

Authors:  Tomonori Tamura; Motoki Osawa; Yu Kakimoto; Eriko Ochiai; Takanori Suzuki; Takashi Nakamura
Journal:  Int J Legal Med       Date:  2016-11-22       Impact factor: 2.686

4.  Curiosities of X chromosomal markers and haplotypes.

Authors:  Daniel Kling
Journal:  Int J Legal Med       Date:  2017-05-26       Impact factor: 2.686

5.  Characterization of 58 STRs and 94 SNPs with the ForenSeq™ DNA signature prep kit in Mexican-Mestizos from the Monterrey city (Northeast, Mexico).

Authors:  José Alonso Aguilar-Velázquez; Miguel Ángel Duran-Salazar; Miranda Fabiola Córdoba-Mercado; Carolina Elena Coronado-Avila; Orlando Salas-Salas; Gabriela Martinez-Cortés; Ferrán Casals; Francesc Calafell; Benito Ramos-González; Héctor Rangel-Villalobos
Journal:  Mol Biol Rep       Date:  2022-06-03       Impact factor: 2.742

Review 6.  Forensic Applications of Markers Present on the X Chromosome.

Authors:  Fernanda M Garcia; Bárbara G O Bessa; Eldamária V W Dos Santos; Julia D P Pereira; Lyvia N R Alves; Lucas A Vianna; Matheus C Casotti; Raquel S R Trabach; Victor S Stange; Débora D Meira; Iuri D Louro
Journal:  Genes (Basel)       Date:  2022-09-07       Impact factor: 4.141

7.  X-chromosomal STR based genetic polymorphisms and demographic history of Sri Lankan ethnicities and their relationship with global populations.

Authors:  Nandika Perera; Gayani Galhena; Gaya Ranawaka
Journal:  Sci Rep       Date:  2021-06-17       Impact factor: 4.379

  7 in total

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