Literature DB >> 25770733

Electron cryotomography of vitrified cells with a Volta phase plate.

Yoshiyuki Fukuda1, Ulrike Laugks2, Vladan Lučić2, Wolfgang Baumeister2, Radostin Danev2.   

Abstract

Electron cryotomography provides a means of studying the three dimensional structure of pleomorphic objects, such as organelles or cells, with a resolution of 1-3nm. A limitation in the study of radiation sensitive biological samples is the low signal-to-noise ratio of the tomograms which may obscure fine details. To overcome this limitation, the recently developed Volta phase plate (VPP) was applied in electron cryotomographic studies of a wide range of cellular structures, from magnetotactic bacteria to primary cultured neurons. The results show that the VPP improves contrast significantly and consequently the signal-to-noise ratio of the tomograms, moreover it avoids disturbing fringing artifacts typical for Zernike phase plates. The contrast improvement provided by the VPP was also confirmed in projection images of relatively thick (∼400nm) samples. In order to investigate the respective contributions of the VPP and the energy filter, images acquired with different combinations of the two were compared. Zero-loss energy filtering reduced the background noise in thicker areas of the sample and improved the contrast of features such as poly-β-hydroxybutyrate granules in magnetotactic bacteria, whereas the VPP provided an overall contrast improvement for all sample areas. After 3D reconstruction, tomograms acquired with the combination of a VPP and an energy filter showed structural features in neuronal processes with outstanding clarity. We also show that the VPP can be combined with focused ion beam milling to examine structures embedded deeply inside cells. Thus, we expect that VPP will become a standard element of the electron cryotomography workflow.
Copyright © 2015 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Electron cryotomography; Focused ion beam; Phase contrast; Primary cultured neurons; Volta phase plate

Mesh:

Substances:

Year:  2015        PMID: 25770733     DOI: 10.1016/j.jsb.2015.03.004

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  42 in total

1.  Removing Contamination-Induced Reconstruction Artifacts from Cryo-electron Tomograms.

Authors:  Jose-Jesus Fernandez; Ulrike Laugks; Miroslava Schaffer; Felix J B Bäuerlein; Maryam Khoshouei; Wolfgang Baumeister; Vladan Lucic
Journal:  Biophys J       Date:  2015-12-30       Impact factor: 4.033

2.  Morphologies of synaptic protein membrane fusion interfaces.

Authors:  Preeti Gipson; Yoshiyuki Fukuda; Radostin Danev; Ying Lai; Dong-Hua Chen; Wolfgang Baumeister; Axel T Brunger
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-24       Impact factor: 11.205

3.  In situ structural studies of tripeptidyl peptidase II (TPPII) reveal spatial association with proteasomes.

Authors:  Yoshiyuki Fukuda; Florian Beck; Jürgen M Plitzko; Wolfgang Baumeister
Journal:  Proc Natl Acad Sci U S A       Date:  2017-04-10       Impact factor: 11.205

Review 4.  A new view into prokaryotic cell biology from electron cryotomography.

Authors:  Catherine M Oikonomou; Yi-Wei Chang; Grant J Jensen
Journal:  Nat Rev Microbiol       Date:  2016-02-29       Impact factor: 60.633

5.  Structural studies of Acidianus tailed spindle virus reveal a structural paradigm used in the assembly of spindle-shaped viruses.

Authors:  Rebecca Hochstein; Daniel Bollschweiler; Sanjay Dharmavaram; Nathanael G Lintner; Jürgen M Plitzko; Robijn Bruinsma; Harald Engelhardt; Mark J Young; William S Klug; C Martin Lawrence
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-12       Impact factor: 11.205

Review 6.  Biological Applications at the Cutting Edge of Cryo-Electron Microscopy.

Authors:  Rebecca S Dillard; Cheri M Hampton; Joshua D Strauss; Zunlong Ke; Deanna Altomara; Ricardo C Guerrero-Ferreira; Gabriella Kiss; Elizabeth R Wright
Journal:  Microsc Microanal       Date:  2018-08       Impact factor: 4.127

Review 7.  The Lateral Organization and Mobility of Plasma Membrane Components.

Authors:  Ken Jacobson; Ping Liu; B Christoffer Lagerholm
Journal:  Cell       Date:  2019-05-02       Impact factor: 41.582

8.  Effect of fringe-artifact correction on sub-tomogram averaging from Zernike phase-plate cryo-TEM.

Authors:  Gregory P Kishchenko; Radostin Danev; Rebecca Fisher; Jie He; Chyongere Hsieh; Michael Marko; Haixin Sui
Journal:  J Struct Biol       Date:  2015-07-22       Impact factor: 2.867

9.  Cryo electron tomography with volta phase plate reveals novel structural foundations of the 96-nm axonemal repeat in the pathogen Trypanosoma brucei.

Authors:  Simon Imhof; Jiayan Zhang; Hui Wang; Khanh Huy Bui; Hoangkim Nguyen; Ivo Atanasov; Wong H Hui; Shun Kai Yang; Z Hong Zhou; Kent L Hill
Journal:  Elife       Date:  2019-11-11       Impact factor: 8.140

10.  Isolation and Characterization of Metallosphaera Turreted Icosahedral Virus, a Founding Member of a New Family of Archaeal Viruses.

Authors:  Cassia Wagner; Vijay Reddy; Francisco Asturias; Maryam Khoshouei; John E Johnson; Pilar Manrique; Jacob Munson-McGee; Wolfgang Baumeister; C Martin Lawrence; Mark J Young
Journal:  J Virol       Date:  2017-09-27       Impact factor: 5.103

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