Warning: Undefined array key "mm" in /www/wwwroot/www.ai-bt.com/si.php on line 10 Deprecated: trim(): Passing null to parameter #1 ($string) of type string is deprecated in /www/wwwroot/www.ai-bt.com/si.php on line 10 Interplay between DNA supercoiling and transcription elongation.

Literature DB >> 25764330

Interplay between DNA supercoiling and transcription elongation.

Abstract

Transcription-coupled DNA supercoiling has been shown to be an important regulator of transcription that is broadly present in the cell. Here we review experimental work which shows that RNA polymerase is a powerful torsional motor that can alter DNA topology and structure, and DNA supercoiling in turn directly affects transcription elongation.

Keywords: DNA supercoiling; E. coli RNA polymerase; angular optical trap; single molecule; torque; torsional motor; transcription; twin supercoiled domain model

Mesh：

Substances：

Year: 2014 PMID： 25764330 PMCID： PMC4215170 DOI： 10.4161/trns.28636

Source DB: PubMed Journal: Transcription ISSN： 2154-1272

29 in total

Review 1. Cellular strategies for regulating DNA supercoiling: a single-molecule perspective.

Authors: Daniel A Koster; Aurélien Crut; Stewart Shuman; Mary-Ann Bjornsti; Nynke H Dekker
Journal: Cell Date: 2010-08-20 Impact factor: 41.582

2. E. coli NusG inhibits backtracking and accelerates pause-free transcription by promoting forward translocation of RNA polymerase.

Authors: Kristina M Herbert; Jing Zhou; Rachel A Mooney; Arthur La Porta; Robert Landick; Steven M Block
Journal: J Mol Biol Date: 2010-04-08 Impact factor: 5.469

3. Linking RNA polymerase backtracking to genome instability in E. coli.

Authors: Dipak Dutta; Konstantin Shatalin; Vitaly Epshtein; Max E Gottesman; Evgeny Nudler
Journal: Cell Date: 2011-08-19 Impact factor: 41.582

4. Transcription-coupled hypernegative supercoiling of plasmid DNA by T7 RNA polymerase in Escherichia coli topoisomerase I-deficient strains.

Authors: Rebecca Samul; Fenfei Leng
Journal: J Mol Biol Date: 2007-10-11 Impact factor: 5.469

5. Torque spectroscopy of DNA: base-pair stability, boundary effects, backbending, and breathing dynamics.

Authors: Florian C Oberstrass; Louis E Fernandes; Paul Lebel; Zev Bryant
Journal: Phys Rev Lett Date: 2013-04-25 Impact factor: 9.161

6. Backtracking determines the force sensitivity of RNAP II in a factor-dependent manner.

Authors: Eric A Galburt; Stephan W Grill; Anna Wiedmann; Lucyna Lubkowska; Jason Choy; Eva Nogales; Mikhail Kashlev; Carlos Bustamante
Journal: Nature Date: 2007-03-14 Impact factor: 49.962

7. Underwound DNA under tension: structure, elasticity, and sequence-dependent behaviors.

Authors: Maxim Y Sheinin; Scott Forth; John F Marko; Michelle D Wang
Journal: Phys Rev Lett Date: 2011-09-01 Impact factor: 9.161

8. Transcription forms and remodels supercoiling domains unfolding large-scale chromatin structures.

Authors: Catherine Naughton; Nicolaos Avlonitis; Samuel Corless; James G Prendergast; Ioulia K Mati; Paul P Eijk; Scott L Cockroft; Mark Bradley; Bauke Ylstra; Nick Gilbert
Journal: Nat Struct Mol Biol Date: 2013-02-17 Impact factor: 15.369

9. Transcription-dependent dynamic supercoiling is a short-range genomic force.

Authors: Fedor Kouzine; Ashutosh Gupta; Laura Baranello; Damian Wojtowicz; Khadija Ben-Aissa; Juhong Liu; Teresa M Przytycka; David Levens
Journal: Nat Struct Mol Biol Date: 2013-02-17 Impact factor: 15.369

10. The generation of promoter-mediated transcriptional noise in bacteria.

Authors: Namiko Mitarai; Ian B Dodd; Michael T Crooks; Kim Sneppen
Journal: PLoS Comput Biol Date: 2008-07-11 Impact factor: 4.475

23 in total

Review 1. DNA supercoiling is a fundamental regulatory principle in the control of bacterial gene expression.

Authors: Charles J Dorman; Matthew J Dorman
Journal: Biophys Rev Date: 2016-06-16

Review 2. Controlling gene expression by DNA mechanics: emerging insights and challenges.

Authors: David Levens; Laura Baranello; Fedor Kouzine
Journal: Biophys Rev Date: 2016-11-14

Review 3. The dynamic interplay between DNA topoisomerases and DNA topology.

Authors: Yeonee Seol; Keir C Neuman
Journal: Biophys Rev Date: 2016-11-14

Review 4. Controlling gene expression by DNA mechanics: emerging insights and challenges.

Authors: David Levens; Laura Baranello; Fedor Kouzine
Journal: Biophys Rev Date: 2016-08-20

Review 5. DNA supercoiling is a fundamental regulatory principle in the control of bacterial gene expression.

Authors: Charles J Dorman; Matthew J Dorman
Journal: Biophys Rev Date: 2016-11-14

6. Large-Scale Conformational Transitions in Supercoiled DNA Revealed by Coarse-Grained Simulation.

Authors: Brad A Krajina; Andrew J Spakowitz
Journal: Biophys J Date: 2016-10-04 Impact factor: 4.033

7. The Use of Psoralen Photobinding to Study Transcription-Induced Supercoiling.

Authors: Fedor Kouzine; Laura Baranello; David Levens
Journal: Methods Mol Biol Date: 2018

8. Transmission of dynamic supercoiling in linear and multi-way branched DNAs and its regulation revealed by a fluorescent G-quadruplex torsion sensor.

Authors: Ye Xia; Ke-Wei Zheng; Yi-de He; Hong-He Liu; Cui-Jiao Wen; Yu-Hua Hao; Zheng Tan
Journal: Nucleic Acids Res Date: 2018-08-21 Impact factor: 16.971

9. The Dynamic Interplay Between DNA Topoisomerases and DNA Topology.

Authors: Yeonee Seol; Keir C Neuman
Journal: Biophys Rev Date: 2016-07-02

Review 10. Physiological functions of programmed DNA breaks in signal-induced transcription.

Authors: Janusz Puc; Aneel K Aggarwal; Michael G Rosenfeld
Journal: Nat Rev Mol Cell Biol Date: 2017-05-24 Impact factor: 94.444