Literature DB >> 25764109

The RNA polymerase II preinitiation complex. Through what pathway is the complex assembled?

Donal S Luse1.   

Abstract

The general transcription factors required for the assembly of the RNA polymerase II preinitiation complex at TATA-dependent promoters are well known. However, recent studies point to two quite distinct pathways for assembly of these components into functional transcription complexes. In this review, the two pathways are compared and potential implications for gene regulatory mechanisms are discussed.

Keywords:  RNA polymerase II; TBP; TFIIB; TFIIE; TFIIF; TFIIH; general transcription factors; preinitiation complex

Mesh：

Substances：

Year:  2014        PMID： 25764109      PMCID： PMC4214227          DOI： 10.4161/trns.27050

Source DB:  PubMed          Journal:  Transcription        ISSN： 2154-1272


  80 in total

1.  Dual roles for transcription factor IIF in promoter escape by RNA polymerase II.

Authors:  Q Yan; R J Moreland; J W Conaway; R C Conaway
Journal:  J Biol Chem       Date:  1999-12-10       Impact factor: 5.157

2.  A transcription reinitiation intermediate that is stabilized by activator.

Authors:  N Yudkovsky; J A Ranish; S Hahn
Journal:  Nature       Date:  2000-11-09       Impact factor: 49.962

3.  Strong natural pausing by RNA polymerase II within 10 bases of transcription start may result in repeated slippage and reextension of the nascent RNA.

Authors:  Mahadeb Pal; Donal S Luse
Journal:  Mol Cell Biol       Date:  2002-01       Impact factor: 4.272

Review 4.  Structure and mechanism of the RNA polymerase II transcription machinery.

Authors:  Steven Hahn
Journal:  Nat Struct Mol Biol       Date:  2004-05       Impact factor: 15.369

5.  Rational design of a super core promoter that enhances gene expression.

Authors:  Tamar Juven-Gershon; Susan Cheng; James T Kadonaga
Journal:  Nat Methods       Date:  2006-11       Impact factor: 28.547

6.  Assembly of transcription factor IIB at a promoter in vivo requires contact with RNA polymerase II.

Authors:  Laura M Elsby; Amanda J M O'Donnell; Laura M Green; Andrew D Sharrocks; Stefan G E Roberts
Journal:  EMBO Rep       Date:  2006-07-28       Impact factor: 8.807

7.  Mechanism of ATP-dependent promoter melting by transcription factor IIH.

Authors:  T K Kim; R H Ebright; D Reinberg
Journal:  Science       Date:  2000-05-26       Impact factor: 47.728

8.  Abortive initiation by RNA polymerase II in vitro at the adenovirus 2 major late promoter.

Authors:  D S Luse; G A Jacob
Journal:  J Biol Chem       Date:  1987-11-05       Impact factor: 5.157

9.  Isolation of three proteins that bind to mammalian RNA polymerase II.

Authors:  M Sopta; R W Carthew; J Greenblatt
Journal:  J Biol Chem       Date:  1985-08-25       Impact factor: 5.157

10.  Two dissociable subunits of yeast RNA polymerase II stimulate the initiation of transcription at a promoter in vitro.

Authors:  A M Edwards; C M Kane; R A Young; R D Kornberg
Journal:  J Biol Chem       Date:  1991-01-05       Impact factor: 5.157
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  16 in total

1.  Ras and Rho GTPase regulation of Pol II transcription: A shortcut model revisited.

Authors:  Zhi-Liang Zheng
Journal:  Transcription       Date:  2017-05-26

2.  Role of transcription complexes in the formation of the basal methylation pattern in early development.

Authors:  Razi Greenfield; Amalia Tabib; Ilana Keshet; Joshua Moss; Ofra Sabag; Alon Goren; Howard Cedar
Journal:  Proc Natl Acad Sci U S A       Date:  2018-09-26       Impact factor: 11.205

Review 3.  An Epigenetic Journey: Epstein-Barr Virus Transcribes Chromatinized and Subsequently Unchromatinized Templates during Its Lytic Cycle.

Authors:  Adityarup Chakravorty; Bill Sugden; Eric C Johannsen
Journal:  J Virol       Date:  2019-04-03       Impact factor: 5.103

4.  Second-generation method for analysis of chromatin binding with formaldehyde-cross-linking kinetics.

Authors:  Hussain Zaidi; Elizabeth A Hoffman; Savera J Shetty; Stefan Bekiranov; David T Auble
Journal:  J Biol Chem       Date:  2017-09-26       Impact factor: 5.157

5.  An Improved Method for Measuring Chromatin-binding Dynamics Using Time-dependent Formaldehyde Crosslinking.

Authors:  Elizabeth A Hoffman; Hussain Zaidi; Savera J Shetty; Stefan Bekiranov; David T Auble
Journal:  Bio Protoc       Date:  2018-02-20

6.  Dynamics of RNA polymerase II and elongation factor Spt4/5 recruitment during activator-dependent transcription.

Authors:  Grace A Rosen; Inwha Baek; Larry J Friedman; Yoo Jin Joo; Stephen Buratowski; Jeff Gelles
Journal:  Proc Natl Acad Sci U S A       Date:  2020-12-08       Impact factor: 12.779

7.  Regulation of RNA polymerase II processivity by Spt5 is restricted to a narrow window during elongation.

Authors:  Johanna Fitz; Tobias Neumann; Rushad Pavri
Journal:  EMBO J       Date:  2018-03-07       Impact factor: 11.598

8.  The Herpes Simplex Virus 1 Protein ICP4 Acts as both an Activator and a Repressor of Host Genome Transcription during Infection.

Authors:  Thomas Rivas; James A Goodrich; Jennifer F Kugel
Journal:  Mol Cell Biol       Date:  2021-07-12       Impact factor: 4.272

9.  The Establishment of a Hyperactive Structure Allows the Tumour Suppressor Protein p53 to Function through P-TEFb during Limited CDK9 Kinase Inhibition.

Authors:  Thomas K Albert; Claudia Antrecht; Elisabeth Kremmer; Michael Meisterernst
Journal:  PLoS One       Date:  2016-01-08       Impact factor: 3.240

10.  Single molecule microscopy reveals mechanistic insight into RNA polymerase II preinitiation complex assembly and transcriptional activity.

Authors:  Abigail E Horn; Jennifer F Kugel; James A Goodrich
Journal:  Nucleic Acids Res       Date:  2016-04-25       Impact factor: 16.971
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