Literature DB >> 25762514

Structure of p15(PAF)-PCNA complex and implications for clamp sliding during DNA replication and repair.

Alfredo De Biasio1, Alain Ibáñez de Opakua1, Gulnahar B Mortuza2, Rafael Molina3, Tiago N Cordeiro4, Francisco Castillo5, Maider Villate1, Nekane Merino1, Sandra Delgado1, David Gil-Cartón1, Irene Luque5, Tammo Diercks1, Pau Bernadó4, Guillermo Montoya6, Francisco J Blanco7.   

Abstract

The intrinsically disordered protein p15(PAF) regulates DNA replication and repair by binding to the proliferating cell nuclear antigen (PCNA) sliding clamp. We present the structure of the human p15(PAF)-PCNA complex. Crystallography and NMR show the central PCNA-interacting protein motif (PIP-box) of p15(PAF) tightly bound to the front-face of PCNA. In contrast to other PCNA-interacting proteins, p15(PAF) also contacts the inside of, and passes through, the PCNA ring. The disordered p15(PAF) termini emerge at opposite faces of the ring, but remain protected from 20S proteasomal degradation. Both free and PCNA-bound p15(PAF) binds DNA mainly through its histone-like N-terminal tail, while PCNA does not, and a model of the ternary complex with DNA inside the PCNA ring is consistent with electron micrographs. We propose that p15(PAF) acts as a flexible drag that regulates PCNA sliding along the DNA and facilitates the switch from replicative to translesion synthesis polymerase binding.

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Year:  2015        PMID: 25762514     DOI: 10.1038/ncomms7439

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  29 in total

Review 1.  Forging Ahead through Darkness: PCNA, Still the Principal Conductor at the Replication Fork.

Authors:  Katherine N Choe; George-Lucian Moldovan
Journal:  Mol Cell       Date:  2017-02-02       Impact factor: 17.970

2.  Disentangling polydispersity in the PCNA-p15PAF complex, a disordered, transient and multivalent macromolecular assembly.

Authors:  Tiago N Cordeiro; Po-Chia Chen; Alfredo De Biasio; Nathalie Sibille; Francisco J Blanco; Jochen S Hub; Ramon Crehuet; Pau Bernadó
Journal:  Nucleic Acids Res       Date:  2017-02-17       Impact factor: 16.971

3.  PAF-Myc-Controlled Cell Stemness Is Required for Intestinal Regeneration and Tumorigenesis.

Authors:  Moon Jong Kim; Bo Xia; Han Na Suh; Sung Ho Lee; Sohee Jun; Esther M Lien; Jie Zhang; Kaifu Chen; Jae-Il Park
Journal:  Dev Cell       Date:  2018-03-12       Impact factor: 12.270

4.  The p12 subunit of human polymerase δ uses an atypical PIP box for molecular recognition of proliferating cell nuclear antigen (PCNA).

Authors:  Amaia Gonzalez-Magaña; Alain Ibáñez de Opakua; Miguel Romano-Moreno; Javier Murciano-Calles; Nekane Merino; Irene Luque; Adriana L Rojas; Silvia Onesti; Francisco J Blanco; Alfredo De Biasio
Journal:  J Biol Chem       Date:  2019-01-17       Impact factor: 5.157

5.  PAF promotes stemness and radioresistance of glioma stem cells.

Authors:  Derrick Sek Tong Ong; Baoli Hu; Yan Wing Ho; Charles-Etienne Gabriel Sauvé; Christopher A Bristow; Qianghu Wang; Asha S Multani; Peiwen Chen; Luigi Nezi; Shan Jiang; Claire Elizabeth Gorman; Marta Moreno Monasterio; Dimpy Koul; Matteo Marchesini; Simona Colla; Eun-Jung Jin; Erik P Sulman; Denise J Spring; Wai-Kwan Alfred Yung; Roel G W Verhaak; Lynda Chin; Y Alan Wang; Ronald A DePinho
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-09       Impact factor: 11.205

6.  Molecular mechanisms of eukaryotic origin initiation, replication fork progression, and chromatin maintenance.

Authors:  Zuanning Yuan; Huilin Li
Journal:  Biochem J       Date:  2020-09-30       Impact factor: 3.857

7.  The S-phase-induced lncRNA SUNO1 promotes cell proliferation by controlling YAP1/Hippo signaling pathway.

Authors:  Qinyu Hao; Xinying Zong; Qinyu Sun; Yo-Chuen Lin; You Jin Song; Seyedsasan Hashemikhabir; Rosaline Yc Hsu; Mohammad Kamran; Ritu Chaudhary; Vidisha Tripathi; Deepak Kumar Singh; Arindam Chakraborty; Xiao Ling Li; Yoon Jung Kim; Arturo V Orjalo; Maria Polycarpou-Schwarz; Branden S Moriarity; Lisa M Jenkins; Hans E Johansson; Yuelin J Zhu; Sven Diederichs; Anindya Bagchi; Tae Hoon Kim; Sarath C Janga; Ashish Lal; Supriya G Prasanth; Kannanganattu V Prasanth
Journal:  Elife       Date:  2020-10-27       Impact factor: 8.140

8.  P15, MDM2, NF-κB, and Bcl-2 expression in primary bone tumor and correlation with tumor formation and metastasis.

Authors:  Guibin Qian; Songnan Hao; Dawei Yang; Qinggang Meng
Journal:  Int J Clin Exp Pathol       Date:  2015-11-01

9.  A novel non-canonical PIP-box mediates PARG interaction with PCNA.

Authors:  Tanja Kaufmann; Irina Grishkovskaya; Anton A Polyansky; Sebastian Kostrhon; Eva Kukolj; Karin M Olek; Sebastien Herbert; Etienne Beltzung; Karl Mechtler; Thomas Peterbauer; Josef Gotzmann; Lijuan Zhang; Markus Hartl; Bojan Zagrovic; Kareem Elsayad; Kristina Djinovic-Carugo; Dea Slade
Journal:  Nucleic Acids Res       Date:  2017-09-19       Impact factor: 16.971

10.  2'-Hydroxyflavanone induced changes in the proteomic profile of breast cancer cells.

Authors:  Lokesh D Nagaprashantha; Jyotsana Singhal; Shireen Chikara; Gabriel Gugiu; David Horne; Sanjay Awasthi; Ravi Salgia; Sharad S Singhal
Journal:  J Proteomics       Date:  2018-09-21       Impact factor: 4.044

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