Literature DB >> 25762418

Whole-Exome Enrichment with the Illumina TruSeq Exome Enrichment Platform.

Rui Chen1, Hogune Im1, Michael Snyder1.   

Abstract

Multiple platforms are available for whole-exome enrichment and sequencing (WES). This protocol is based on the Illumina TruSeq Exome Enrichment platform, which captures ∼62 Mb of the human exonic regions using 95-base DNA probes. In addition to covering the RefSeq and Ensembl coding sequences, the enriched sequences also include ∼28 Mb of RefSeq untranslated regions (UTR). The protocol can be performed at the benchside without the need for automation, and the resulting library can be used for targeted next-generation sequencing on an Illumina HiSeq 2000 sequencer.
© 2015 Cold Spring Harbor Laboratory Press.

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Year:  2015        PMID: 25762418      PMCID: PMC4490022          DOI: 10.1101/pdb.prot084863

Source DB:  PubMed          Journal:  Cold Spring Harb Protoc        ISSN: 1559-6095


  3 in total

1.  Whole-Exome Enrichment with the Roche NimbleGen SeqCap EZ Exome Library SR Platform.

Authors:  Rui Chen; Hogune Im; Michael Snyder
Journal:  Cold Spring Harb Protoc       Date:  2015-03-11

2.  Whole-Exome Enrichment with the Agilent SureSelect Human All Exon Platform.

Authors:  Rui Chen; Hogune Im; Michael Snyder
Journal:  Cold Spring Harb Protoc       Date:  2015-03-11

3.  Performance comparison of exome DNA sequencing technologies.

Authors:  Michael J Clark; Rui Chen; Hugo Y K Lam; Konrad J Karczewski; Rong Chen; Ghia Euskirchen; Atul J Butte; Michael Snyder
Journal:  Nat Biotechnol       Date:  2011-09-25       Impact factor: 68.164

  3 in total
  6 in total

Review 1.  Cancer proteogenomics: current impact and future prospects.

Authors:  D R Mani; Karsten Krug; Bing Zhang; Shankha Satpathy; Karl R Clauser; Li Ding; Matthew Ellis; Michael A Gillette; Steven A Carr
Journal:  Nat Rev Cancer       Date:  2022-03-02       Impact factor: 60.716

2.  Whole-Exome Enrichment with the Roche NimbleGen SeqCap EZ Exome Library SR Platform.

Authors:  Rui Chen; Hogune Im; Michael Snyder
Journal:  Cold Spring Harb Protoc       Date:  2015-03-11

3.  Whole-Exome Enrichment with the Agilent SureSelect Human All Exon Platform.

Authors:  Rui Chen; Hogune Im; Michael Snyder
Journal:  Cold Spring Harb Protoc       Date:  2015-03-11

Review 4.  Next Generation Sequencing and Bioinformatics Analysis of Family Genetic Inheritance.

Authors:  Aquillah M Kanzi; James Emmanuel San; Benjamin Chimukangara; Eduan Wilkinson; Maryam Fish; Veron Ramsuran; Tulio de Oliveira
Journal:  Front Genet       Date:  2020-10-23       Impact factor: 4.599

5.  Hybrid Capture-Based Next Generation Sequencing and Its Application to Human Infectious Diseases.

Authors:  Maxime Gaudin; Christelle Desnues
Journal:  Front Microbiol       Date:  2018-11-27       Impact factor: 5.640

6.  A clear cancer cell line (150057) derived from human endometrial carcinoma harbors two novel mutations.

Authors:  Yu-Hsun Chang; Dah-Ching Ding
Journal:  BMC Cancer       Date:  2020-11-03       Impact factor: 4.430

  6 in total

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