Literature DB >> 25761502

Role of precursor mRNA splicing in nutrient-induced alterations in gene expression and metabolism.

Suhana Ravi1, Rudolf J Schilder2, Scot R Kimball3.   

Abstract

Precursor mRNA (pre-mRNA) splicing is a critical step in gene expression that results in the removal of intronic sequences from immature mRNA, leading to the production of mature mRNA that can be translated into protein. Alternative pre-mRNA splicing is the process whereby alternative exons and/or introns are selectively included or excluded, generating mature mRNAs that encode proteins that may differ in function. The resulting alterations in the pattern of protein isoform expression can result in changes in protein-protein interaction, subcellular localization, and flux through metabolic pathways. Although basic mechanisms of pre-mRNA splicing of introns and exons are reasonably well characterized, how these mechanisms are regulated remains poorly understood. The goal of this review is to highlight selected recent advances in our understanding of the regulation of pre-mRNA splicing by nutrients and modulation of nutrient metabolism that result from changes in pre-mRNA splicing.
© 2015 American Society for Nutrition.

Keywords:  alternative splicing; mRNA; macronutrient; micronutrient; skeletal muscle; splice factors

Mesh:

Substances:

Year:  2015        PMID: 25761502      PMCID: PMC4408736          DOI: 10.3945/jn.114.203216

Source DB:  PubMed          Journal:  J Nutr        ISSN: 0022-3166            Impact factor:   4.798


  43 in total

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Authors:  Niketa A Patel; Shijie S Song; Denise R Cooper
Journal:  Gene Expr       Date:  2006

Review 2.  Pre-mRNA processing reaches back to transcription and ahead to translation.

Authors:  Melissa J Moore; Nick J Proudfoot
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

3.  A novel FADS1 isoform potentiates FADS2-mediated production of eicosanoid precursor fatty acids.

Authors:  Woo Jung Park; Kumar S D Kothapalli; Holly T Reardon; Peter Lawrence; Shu-Bing Qian; J Thomas Brenna
Journal:  J Lipid Res       Date:  2012-05-22       Impact factor: 5.922

4.  The IRE1α-XBP1 pathway regulates metabolic stress-induced compensatory proliferation of pancreatic β-cells.

Authors:  Tongfu Xu; Liu Yang; Cheng Yan; Xiaoxia Wang; Ping Huang; Feng Zhao; Liyun Zhao; Mingliang Zhang; Weiping Jia; Xiangdong Wang; Yong Liu
Journal:  Cell Res       Date:  2014-05-06       Impact factor: 25.617

5.  Dietary long-chain polyunsaturated fatty acids upregulate expression of FADS3 transcripts.

Authors:  Holly T Reardon; Andrea T Hsieh; Woo Jung Park; Kumar S D Kothapalli; Joshua C Anthony; Peter W Nathanielsz; J Thomas Brenna
Journal:  Prostaglandins Leukot Essent Fatty Acids       Date:  2012-03-06       Impact factor: 4.006

Review 6.  Regulation of splicing by SR proteins and SR protein-specific kinases.

Authors:  Zhihong Zhou; Xiang-Dong Fu
Journal:  Chromosoma       Date:  2013-03-24       Impact factor: 4.316

7.  Dietary iodide controls its own absorption through post-transcriptional regulation of the intestinal Na+/I- symporter.

Authors:  Juan Pablo Nicola; Andrea Reyna-Neyra; Nancy Carrasco; Ana Maria Masini-Repiso
Journal:  J Physiol       Date:  2012-09-24       Impact factor: 5.182

8.  A novel GIP receptor splice variant influences GIP sensitivity of pancreatic beta-cells in obese mice.

Authors:  Norio Harada; Yuichiro Yamada; Katsushi Tsukiyama; Chizumi Yamada; Yasuhiko Nakamura; Eri Mukai; Akihiro Hamasaki; Xibao Liu; Kentaro Toyoda; Yutaka Seino; Nobuya Inagaki
Journal:  Am J Physiol Endocrinol Metab       Date:  2007-10-30       Impact factor: 4.310

9.  Starvation actively inhibits splicing of glucose-6-phosphate dehydrogenase mRNA via a bifunctional ESE/ESS element bound by hnRNP K.

Authors:  T J Cyphert; A L Suchanek; B N Griffith; L M Salati
Journal:  Biochim Biophys Acta       Date:  2013-04-28

10.  Zinc-induced modulation of SRSF6 activity alters Bim splicing to promote generation of the most potent apoptotic isoform BimS.

Authors:  Hirokazu Hara; Tatsuya Takeda; Nozomi Yamamoto; Keisuke Furuya; Kazuya Hirose; Tetsuro Kamiya; Tetsuo Adachi
Journal:  FEBS J       Date:  2013-06-03       Impact factor: 5.542

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  12 in total

1.  Identify gene expression pattern change at transcriptional and post-transcriptional levels.

Authors:  Ji-Gang Zhang; Chao Xu; Lan Zhang; Wei Zhu; Hui Shen; Hong-Wen Deng
Journal:  Transcription       Date:  2019-02-05

2.  Dysregulation of the Splicing Machinery Is Associated to the Development of Nonalcoholic Fatty Liver Disease.

Authors:  Mercedes Del Río-Moreno; Emilia Alors-Pérez; Sandra González-Rubio; Gustavo Ferrín; Oscar Reyes; Manuel Rodríguez-Perálvarez; Marina E Sánchez-Frías; Rafael Sánchez-Sánchez; Sebastián Ventura; José López-Miranda; Rhonda D Kineman; Manuel de la Mata; Justo P Castaño; Manuel D Gahete; Raúl M Luque
Journal:  J Clin Endocrinol Metab       Date:  2019-08-01       Impact factor: 5.958

3.  A single nucleotide polymorphism in the dimethylarginine dimethylaminohydrolase gene is associated with lower risk of pulmonary hypertension in bronchopulmonary dysplasia.

Authors:  Jennifer K Trittmann; Julie M Gastier-Foster; Erik J Zmuda; Jessica Frick; Lynette K Rogers; Veronica J Vieland; Louis G Chicoine; Leif D Nelin
Journal:  Acta Paediatr       Date:  2016-01-11       Impact factor: 2.299

4.  Transcriptome analysis of clock disrupted cancer cells reveals differential alternative splicing of cancer hallmarks genes.

Authors:  Deeksha Malhan; Alireza Basti; Angela Relógio
Journal:  NPJ Syst Biol Appl       Date:  2022-05-12

5.  Transcriptomic Changes in Liver of Young Bulls Caused by Diets Low in Mineral and Protein Contents and Supplemented with n-3 Fatty Acids and Conjugated Linoleic Acid.

Authors:  Sara Pegolo; Alessio Cecchinato; Núria Mach; Massimiliano Babbucci; Marianna Pauletto; Luca Bargelloni; Stefano Schiavon; Giovanni Bittante
Journal:  PLoS One       Date:  2016-12-08       Impact factor: 3.240

6.  Prediction and analysis of essential genes using the enrichments of gene ontology and KEGG pathways.

Authors:  Lei Chen; Yu-Hang Zhang; ShaoPeng Wang; YunHua Zhang; Tao Huang; Yu-Dong Cai
Journal:  PLoS One       Date:  2017-09-05       Impact factor: 3.240

7.  Functional analysis finds differences on the muscle transcriptome of pigs fed an n-3 PUFA-enriched diet with or without antioxidant supplementations.

Authors:  Marika Vitali; Rubina Sirri; Martina Zappaterra; Paolo Zambonelli; Giulia Giannini; Domenico Pietro Lo Fiego; Roberta Davoli
Journal:  PLoS One       Date:  2019-02-20       Impact factor: 3.240

8.  Significance of PD1 Alternative Splicing in Celiac Disease as a Novel Source for Diagnostic and Therapeutic Target.

Authors:  Candelaria Ponce de León; Pedro Lorite; Miguel Ángel López-Casado; Francisco Barro; Teresa Palomeque; María Isabel Torres
Journal:  Front Immunol       Date:  2021-06-16       Impact factor: 7.561

9.  ESRP2 controls an adult splicing programme in hepatocytes to support postnatal liver maturation.

Authors:  Amruta Bhate; Darren J Parker; Thomas W Bebee; Jaegyoon Ahn; Waqar Arif; Edrees H Rashan; Sandip Chorghade; Anthony Chau; Jae-Hyung Lee; Sayeepriyadarshini Anakk; Russ P Carstens; Xinshu Xiao; Auinash Kalsotra
Journal:  Nat Commun       Date:  2015-11-04       Impact factor: 14.919

10.  Dietary Intervention Modulates the Expression of Splicing Machinery in Cardiovascular Patients at High Risk of Type 2 Diabetes Development: From the CORDIOPREV Study.

Authors:  Mercedes Del Río-Moreno; Raúl M Luque; Oriol A Rangel-Zúñiga; Emilia Alors-Pérez; Juan F Alcalá-Diaz; Irene Roncero-Ramos; Antonio Camargo; Manuel D Gahete; José López-Miranda; Justo P Castaño
Journal:  Nutrients       Date:  2020-11-17       Impact factor: 5.717

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