Literature DB >> 31264103

Solution NMR backbone assignment reveals interaction-free tumbling of human lineage-specific Olduvai protein domains.

Aaron Issaian1, Lauren Schmitt1, Alexandra Born1, Parker J Nichols1, James Sikela1, Kirk Hansen1, Beat Vögeli2, Morkos A Henen1,3.   

Abstract

Olduvai protein domains, encoded primarily by NBPF genes, have been linked to both human brain evolution and cognitive diseases such as autism and schizophrenia. There are six primary domains that comprise the Olduvai family: three conserved domains (CON1-3) and three human lineage-specific domains (HLS1-3), which typically occur as a triplet (HLS1, HLS2 and HLS3). Herein, we present the solution NMR assignment of the backbone chemical shifts of the separate HLS1, 2 and 3 domains of NBPF15. Our data suggest that there is no change in the structure of the separate domains when compared to the full-length triplet (HLS1-HLS2-HLS3). We also demonstrate that there is no direct interaction between the three domains.

Entities:  

Keywords:  Autism; Backbone chemical shift assignment; Brain evolution; DUF1220; Gene duplication; Olduvai; Protein domains; Schizophrenia

Mesh:

Substances:

Year:  2019        PMID: 31264103      PMCID: PMC6715528          DOI: 10.1007/s12104-019-09902-0

Source DB:  PubMed          Journal:  Biomol NMR Assign        ISSN: 1874-270X            Impact factor:   0.746


  19 in total

1.  Human lineage-specific amplification, selection, and neuronal expression of DUF1220 domains.

Authors:  Magdalena C Popesco; Erik J Maclaren; Janet Hopkins; Laura Dumas; Michael Cox; Lynne Meltesen; Loris McGavran; Gerald J Wyckoff; James M Sikela
Journal:  Science       Date:  2006-09-01       Impact factor: 47.728

2.  DUF1220-domain copy number implicated in human brain-size pathology and evolution.

Authors:  Laura J Dumas; Majesta S O'Bleness; Jonathan M Davis; C Michael Dickens; Nathan Anderson; J G Keeney; Jay Jackson; Megan Sikela; Armin Raznahan; Jay Giedd; Judith Rapoport; Sandesh S C Nagamani; Ayelet Erez; Nicola Brunetti-Pierri; Rachel Sugalski; James R Lupski; Tasha Fingerlin; Sau Wai Cheung; James M Sikela
Journal:  Am J Hum Genet       Date:  2012-08-16       Impact factor: 11.025

3.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

4.  A novel gene family NBPF: intricate structure generated by gene duplications during primate evolution.

Authors:  Karl Vandepoele; Nadine Van Roy; Katrien Staes; Frank Speleman; Frans van Roy
Journal:  Mol Biol Evol       Date:  2005-08-03       Impact factor: 16.240

Review 5.  DUF1220 domains, cognitive disease, and human brain evolution.

Authors:  L Dumas; J M Sikela
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2009-10-22

6.  DUF1220 copy number is linearly associated with increased cognitive function as measured by total IQ and mathematical aptitude scores.

Authors:  Jonathon M Davis; Veronica B Searles; Nathan Anderson; Jonathon Keeney; Armin Raznahan; L John Horwood; David M Fergusson; Martin A Kennedy; Jay Giedd; James M Sikela
Journal:  Hum Genet       Date:  2014-10-07       Impact factor: 4.132

7.  A novel approach for sequential assignment of 1H, 13C, and 15N spectra of proteins: heteronuclear triple-resonance three-dimensional NMR spectroscopy. Application to calmodulin.

Authors:  M Ikura; L E Kay; A Bax
Journal:  Biochemistry       Date:  1990-05-15       Impact factor: 3.162

8.  The CCPN data model for NMR spectroscopy: development of a software pipeline.

Authors:  Wim F Vranken; Wayne Boucher; Tim J Stevens; Rasmus H Fogh; Anne Pajon; Miguel Llinas; Eldon L Ulrich; John L Markley; John Ionides; Ernest D Laue
Journal:  Proteins       Date:  2005-06-01

9.  NMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy.

Authors:  Woonghee Lee; Marco Tonelli; John L Markley
Journal:  Bioinformatics       Date:  2014-12-12       Impact factor: 6.937

10.  Genomic trade-offs: are autism and schizophrenia the steep price of the human brain?

Authors:  J M Sikela; V B Searles Quick
Journal:  Hum Genet       Date:  2018-01-15       Impact factor: 4.132

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  1 in total

1.  Solution NMR backbone assignments of disordered Olduvai protein domain CON1 employing Hα-detected experiments.

Authors:  Natasia Paukovich; Morkos A Henen; Alya Hussain; Aaron Issaian; James M Sikela; Kirk C Hansen; Beat Vögeli
Journal:  Biomol NMR Assign       Date:  2022-01-30       Impact factor: 0.731

  1 in total

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