| Literature DB >> 25756807 |
A Flaquer1, C Baumbach1, K-H Ladwig2, J Kriebel3, M Waldenberger3, H Grallert3, J Baumert4, T Meitinger5, J Kruse6, A Peters4, R Emeny4, K Strauch1.
Abstract
Despite the fact that mitochondrial dysfunctions are increasingly recognized as key components in stress-related mental disorders, very little is known about the association between posttraumatic stress disorder (PTSD) and mitochondrial variants. To identify susceptibility mitochondrial genes for PTSD, we analyzed a total number of 978 mitochondrial single-nucleotide polymorphisms (mtSNPs) in a sample of 1238 individuals participating in the KORA (Cooperative Health Research in the Region of Augsburg) study. Participants were classified with 'no PTSD', 'partial PTSD' or 'full PTSD' by applying the Posttraumatic Diagnostic Scale and the Impact of Event Scale. To assess PTSD-mtSNP association while taking heteroplasmy into account, we used the raw signal intensity values measured on the microarray and applied linear regression. Significant associations were obtained between full versus no PTSD and two mtSNPs; mt8414C->T (β=-0.954±0.06, Padjusted=0.037) located in adenosine triphosphate (ATP) synthase subunit 8 (MT-ATP8) and mt12501G->A (β=-1.782±0.40, Padjusted=0.015) located in the NADH dehydrogenase subunits 5 (MT-ND5). Heteroplasmy for the two variants towards a larger number of the respective minor alleles increases the risk of having PTSD. NADH dehydrogenase and ATP synthase are both linked to the regulation of reactive oxygen species. Our results highlight the important role of the mitochondrial genome among the factors that contribute to the risk of PTSD. Mitochondrial genetic variants may be more important than has previously been assumed, leading to further insights regarding effects of existing medications, or even to the development of innovative treatments. As this is the first mitochondrial genome-wide association study for PTSDs, further analyses are needed to follow up on the present findings.Entities:
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Year: 2015 PMID: 25756807 PMCID: PMC4354348 DOI: 10.1038/tp.2015.18
Source DB: PubMed Journal: Transl Psychiatry ISSN: 2158-3188 Impact factor: 6.222
Distribution of characteristics of the study population by PTSD status
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| Sample size | 1238 | 875 (70,7%) | 312 (25.2%) | 51 (4.1%) |
| Males (%) | 616 (49.8%) | 472 (53.9%) | 128 (41.0%) | 16 (31.4%) |
| Mean age males | 52.9 | 52.3 | 54.2 | 58.6 |
| Mean age females | 51.2 | 50.8 | 51.8 | 52.3 |
| Affy. 6.0 (465 mtSNPs) | 739 | 502 | 203 | 34 |
| Affy. Axiom (252 mtSNPs) | 1185 | 834 | 300 | 51 |
| Illum. Exome (226 mtSNPs) | 1177 | 828 | 298 | 51 |
| Illum. Metabo (135 mtSNPs) | 1216 | 855 | 310 | 51 |
Abbreviations: Affy., Affymetrix; Illum., Illumina; mtSNP, mitochondrial single-nucleotide polymorphism; PTSD, posttraumatic stress disorder.
Summary of the quality control
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| I | I |
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| Affy. 6.0 | 411 | 0 | 54 | 739 | 3 | 1 822 374 | 194 (<0.05%) |
| Affy. Axiom | 213 | 39 | 0 | 1185 | 4 | 2 019 240 | 33 (<0.05%) |
| Illum. Exome | 226 | 0 | 0 | 1177 | 1 | 5 32 004 | 146 (<0.05%) |
| Illum. Metabo | 126 | 0 | 9 | 1216 | 1 | 306 432 | 73 (<0.05%) |
The number of mitochondrial single-nucleotide polymorphisms (mtSNPs) refers to the SNPs that passed quality control. Several mtSNPs were excluded due to the upper bound cutoff (UB)[39] or because the basepair position was not available in Build 38 (no_B38). Sample size is based on the particular chip. One person may be present on more than one chip. ISNP stands for the number of intensity measures per allele. Itot represents the total number of intensity measures in the sample (ISNP × 2 × sample size × mtSNPs). Each mtSNP contains two intensities (allele A and allele B) and one intensity ratio (A/B). For example, for the Illumina (Illum.) Metabo we have 1216 individuals resulting in 2432 intensities (1216 ratios) per mtSNP. For all 126 mtSNPs (306 432 intensities and 153 216 ratios), only 73 intensity ratios were detected as outliers corresponding to 0.04%. Only the outlier (intensity ratio for that particular person) is removed and the mtSNP remains in the analysis. Affy., Affymetrix.
Figure 1Mitochondrial genome-wide P-values. On the y axis, P-values of the regression coefficient for full PTSD transformed into the negative of the base 10 logarithm, −log10 (P-value), are shown. The x axis represents the mitochondrial genome, displaying the position and relative size of each of the 13 major mitochondrial genes, 12S and 16S rRNAs, hypervariable region 1 (HVR I), hypervariable region 2 (HVR II), as well as the position of the 22 tRNAs (gray). PTSD, posttraumatic stress disorder; rRNA, ribosomal RNA; tRNA, transfer RNA.
Significant results of the association analysis between PTSD and mtSNPs by linear regression
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| Chip | Illumina Exome | Affymetrix 6.0 |
| rs_name | rs28358884 | rs28397767 |
| Position (bp) | 8 414 | 12 501 |
| Alleles | C→T | G→A |
| Minor allele | T | A |
| Functional consequence | Missense | Synonymous |
| Protein | ATP8 | ND5 |
| Gene | MT-ATP8; subunit of ATP synthase, complex V | MT-ND5; subunit of NADH dehydrogenase, complex I |
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| 0.011±0.02,
| 0.1671±0.123,
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| 0.041±0.03,
| −0.117±0.1857,
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| −0.954±0.06,
| −1.782±0.395,
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| −0.017±0.03,
| −0.108±0.165,
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| −0.018±0.001,
| 0.011±0.011,
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Abbreviations: ATP, adenosine triphosphate; mtSNP, mitochondrial single-nucleotide polymorphism; PTSD, posttraumatic stress disorder.
Genomic position in base pairs (bp), alleles, rs_number and point mutation are based on the Mitomap (http://mitomap.org) GRCh38 human genome assembly (rCRS, GeneBank ID J01415.2). An estimated effect size (βSNP) <0 indicates that the risk allele is the minor allele. Nominal P-values are provided for each β. The response variable is with B being the minor allele. Covariate sex baseline: male.