Literature DB >> 25756291

Yeast Golden Gate (yGG) for the Efficient Assembly of S. cerevisiae Transcription Units.

Neta Agmon1, Leslie A Mitchell1, Yizhi Cai2,3, Shigehito Ikushima2, James Chuang2, Allen Zheng2, Woo-Jin Choi2, J Andrew Martin1, Katrina Caravelli2, Giovanni Stracquadanio2, Jef D Boeke1.   

Abstract

We have adapted the Golden Gate DNA assembly method to the assembly of transcription units (TUs) for the yeast Saccharomyces cerevisiae, in a method we call yeast Golden Gate (yGG). yGG allows for the easy assembly of TUs consisting of promoters (PRO), coding sequences (CDS), and terminators (TER). Carefully designed overhangs exposed by digestion with a type IIS restriction enzyme enable virtually seamless assembly of TUs that, in principle, contain all of the information necessary to express a gene of interest in yeast. We also describe a versatile set of yGG acceptor vectors to be used for TU assembly. These vectors can be used for low or high copy expression of assembled TUs or integration into carefully selected innocuous genomic loci. yGG provides synthetic biologists and yeast geneticists with an efficient new means by which to engineer S. cerevisiae.

Entities:  

Keywords:  DNA assembly; S. cerevisiae; synthetic biology; transcription unit; yeast Golden Gate

Mesh:

Substances:

Year:  2015        PMID: 25756291     DOI: 10.1021/sb500372z

Source DB:  PubMed          Journal:  ACS Synth Biol        ISSN: 2161-5063            Impact factor:   5.110


  27 in total

1.  Low escape-rate genome safeguards with minimal molecular perturbation of Saccharomyces cerevisiae.

Authors:  Neta Agmon; Zuojian Tang; Kun Yang; Ben Sutter; Shigehito Ikushima; Yizhi Cai; Katrina Caravelli; James A Martin; Xiaoji Sun; Woo Jin Choi; Allen Zhang; Giovanni Stracquadanio; Haiping Hao; Benjamin P Tu; David Fenyo; Joel S Bader; Jef D Boeke
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-07       Impact factor: 11.205

2.  Isolation and evaluation of strong endogenous promoters for the heterologous expression of proteins in Pichia pastoris.

Authors:  Yafei Zhang; Shengyan Wang; Lingfang Lu; Chenshan Zhang; Fan Cai; Yao Lin; Yide Huang
Journal:  World J Microbiol Biotechnol       Date:  2022-09-19       Impact factor: 4.253

3.  High-Titer Production of the Fungal Anhydrotetracycline, TAN-1612, in Engineered Yeasts.

Authors:  Pedro A Baldera-Aguayo; Arden Lee; Virginia W Cornish
Journal:  ACS Synth Biol       Date:  2022-06-14       Impact factor: 5.249

4.  Pichia pastoris Production of Tat-NGB and Its Neuroprotection on Rat Pheochromocytoma Cells.

Authors:  Qiao Ye; Yangdong Sun; Yonghong Wu; Yan Gao; Zhihui Li; Weiguang Li; Chenggang Zhang
Journal:  Mol Biotechnol       Date:  2016-01       Impact factor: 2.695

5.  Bug mapping and fitness testing of chemically synthesized chromosome X.

Authors:  Yi Wu; Bing-Zhi Li; Meng Zhao; Leslie A Mitchell; Ze-Xiong Xie; Qiu-Hui Lin; Xia Wang; Wen-Hai Xiao; Ying Wang; Xiao Zhou; Hong Liu; Xia Li; Ming-Zhu Ding; Duo Liu; Lu Zhang; Bao-Li Liu; Xiao-Le Wu; Fei-Fei Li; Xiu-Tao Dong; Bin Jia; Wen-Zheng Zhang; Guo-Zhen Jiang; Yue Liu; Xue Bai; Tian-Qing Song; Yan Chen; Si-Jie Zhou; Rui-Ying Zhu; Feng Gao; Zheng Kuang; Xuya Wang; Michael Shen; Kun Yang; Giovanni Stracquadanio; Sarah M Richardson; Yicong Lin; Lihui Wang; Roy Walker; Yisha Luo; Ping-Sheng Ma; Huanming Yang; Yizhi Cai; Junbiao Dai; Joel S Bader; Jef D Boeke; Ying-Jin Yuan
Journal:  Science       Date:  2017-03-10       Impact factor: 47.728

6.  Versatile genetic assembly system (VEGAS) to assemble pathways for expression in S. cerevisiae.

Authors:  Leslie A Mitchell; James Chuang; Neta Agmon; Chachrit Khunsriraksakul; Nick A Phillips; Yizhi Cai; David M Truong; Ashan Veerakumar; Yuxuan Wang; María Mayorga; Paul Blomquist; Praneeth Sadda; Joshua Trueheart; Jef D Boeke
Journal:  Nucleic Acids Res       Date:  2015-05-08       Impact factor: 16.971

7.  Construction of Designer Selectable Marker Deletions with a CRISPR-Cas9 Toolbox in Schizosaccharomyces pombe and New Design of Common Entry Vectors.

Authors:  Yu Zhao; Jef D Boeke
Journal:  G3 (Bethesda)       Date:  2018-03-02       Impact factor: 3.154

8.  AssemblX: a user-friendly toolkit for rapid and reliable multi-gene assemblies.

Authors:  Lena Hochrein; Fabian Machens; Juergen Gremmels; Karina Schulz; Katrin Messerschmidt; Bernd Mueller-Roeber
Journal:  Nucleic Acids Res       Date:  2017-06-02       Impact factor: 16.971

9.  Integrative modules for efficient genome engineering in yeast.

Authors:  Triana Amen; Daniel Kaganovich
Journal:  Microb Cell       Date:  2017-06-05

10.  YeastFab: the design and construction of standard biological parts for metabolic engineering in Saccharomyces cerevisiae.

Authors:  Yakun Guo; Junkai Dong; Tong Zhou; Jamie Auxillos; Tianyi Li; Weimin Zhang; Lihui Wang; Yue Shen; Yisha Luo; Yijing Zheng; Jiwei Lin; Guo-Qiang Chen; Qingyu Wu; Yizhi Cai; Junbiao Dai
Journal:  Nucleic Acids Res       Date:  2015-05-08       Impact factor: 16.971

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