Literature DB >> 25753700

GlycoBase and autoGU: resources for interpreting HPLC-glycan data.

Matthew P Campbell1, Lousie Royle, Pauline M Rudd.   

Abstract

The biological relevance of protein glycosylation has made glycomics, the comprehensive study to identify all glycans in an organism, indispensable in many research fields. Determining the structure and functional relationship of glycoproteins requires the comprehensive characterization of glycan structures by a range of analytical methods. High performance liquid chromatography (HPLC) is a well-established technology commonly used for the complete structural elucidation of N- and O-linked glycans; however, the analysis of data is a major bottleneck and robust bioinformatic solutions are required. This chapter describes the availability of databases and tools, GlycoBase and autoGU developed in conjunction with the EUROCarbDB initiative, to assist the interpretation of HPLC-glycan data collections.

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Year:  2015        PMID: 25753700     DOI: 10.1007/978-1-4939-2343-4_2

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  8 in total

1.  N-glycome of the Lysosomal Glycocalyx is Altered in Niemann-Pick Type C Disease (NPC) Model Cells.

Authors:  Marko Kosicek; Ivan Gudelj; Anita Horvatic; Tanja Jovic; Frano Vuckovic; Gordan Lauc; Silva Hecimovic
Journal:  Mol Cell Proteomics       Date:  2018-01-24       Impact factor: 5.911

2.  State-of-the-Art Glycomics Technologies in Glycobiotechnology.

Authors:  Alexander Pralow; Samanta Cajic; Kathirvel Alagesan; Daniel Kolarich; Erdmann Rapp
Journal:  Adv Biochem Eng Biotechnol       Date:  2021       Impact factor: 2.635

3.  Released N-Glycan Analysis for Biotherapeutic Development Using Liquid Chromatography and Mass Spectrometry.

Authors:  Ximo Zhang
Journal:  Methods Mol Biol       Date:  2021

4.  Site-Specific Mapping of Sialic Acid Linkage Isomers by Ion Mobility Spectrometry.

Authors:  Miklos Guttman; Kelly K Lee
Journal:  Anal Chem       Date:  2016-05-02       Impact factor: 6.986

Review 5.  Mass Spectrometry Approaches to Glycomic and Glycoproteomic Analyses.

Authors:  L Renee Ruhaak; Gege Xu; Qiongyu Li; Elisha Goonatilleke; Carlito B Lebrilla
Journal:  Chem Rev       Date:  2018-03-19       Impact factor: 60.622

6.  CHARMM-GUI Glycan Modeler for modeling and simulation of carbohydrates and glycoconjugates.

Authors:  Sang-Jun Park; Jumin Lee; Yifei Qi; Nathan R Kern; Hui Sun Lee; Sunhwan Jo; InSuk Joung; Keehyung Joo; Jooyoung Lee; Wonpil Im
Journal:  Glycobiology       Date:  2019-04-01       Impact factor: 4.313

Review 7.  Emerging glycobiology tools: A renaissance in accessibility.

Authors:  Douglas M Oswald; Brian A Cobb
Journal:  Cell Immunol       Date:  2018-04-25       Impact factor: 4.178

8.  The glycoconjugate ontology (GlycoCoO) for standardizing the annotation of glycoconjugate data and its application.

Authors:  Issaku Yamada; Matthew P Campbell; Nathan Edwards; Leyla Jael Castro; Frederique Lisacek; Julien Mariethoz; Tamiko Ono; Rene Ranzinger; Daisuke Shinmachi; Kiyoko F Aoki-Kinoshita
Journal:  Glycobiology       Date:  2021-08-07       Impact factor: 5.954

  8 in total

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