Literature DB >> 25752575

Phosphoproteomics reveals distinct modes of Mec1/ATR signaling during DNA replication.

Francisco Meirelles Bastos de Oliveira1, Dongsung Kim1, José Renato Cussiol1, Jishnu Das2, Min Cheol Jeong2, Lillian Doerfler3, Kristina Hildegard Schmidt4, Haiyuan Yu2, Marcus Bustamante Smolka5.   

Abstract

The Mec1/Tel1 kinases (human ATR/ATM) play numerous roles in the DNA replication stress response. Despite the multi-functionality of these kinases, studies of their in vivo action have mostly relied on a few well-established substrates. Here we employed a combined genetic-phosphoproteomic approach to monitor Mec1/Tel1 signaling in a systematic, unbiased, and quantitative manner. Unexpectedly, we find that Mec1 is highly active during normal DNA replication, at levels comparable or higher than Mec1's activation state induced by replication stress. This "replication-correlated" mode of Mec1 action requires the 9-1-1 clamp and the Dna2 lagging-strand factor and is distinguishable from Mec1's action in activating the downstream kinase Rad53. We propose that Mec1/ATR performs key functions during ongoing DNA synthesis that are distinct from their canonical checkpoint role during replication stress.
Copyright © 2015 Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 25752575      PMCID: PMC4369404          DOI: 10.1016/j.molcel.2015.01.043

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  31 in total

Review 1.  Maintaining genome stability at the replication fork.

Authors:  Dana Branzei; Marco Foiani
Journal:  Nat Rev Mol Cell Biol       Date:  2010-03       Impact factor: 94.444

2.  ATR-like kinase Mec1 facilitates both chromatin accessibility at DNA replication forks and replication fork progression during replication stress.

Authors:  Jairo Rodriguez; Toshio Tsukiyama
Journal:  Genes Dev       Date:  2013-01-01       Impact factor: 11.361

Review 3.  The ATM protein kinase: regulating the cellular response to genotoxic stress, and more.

Authors:  Yosef Shiloh; Yael Ziv
Journal:  Nat Rev Mol Cell Biol       Date:  2013-03-13       Impact factor: 94.444

4.  The unstructured C-terminal tail of the 9-1-1 clamp subunit Ddc1 activates Mec1/ATR via two distinct mechanisms.

Authors:  Vasundhara M Navadgi-Patil; Peter M Burgers
Journal:  Mol Cell       Date:  2009-12-11       Impact factor: 17.970

5.  Lagging strand maturation factor Dna2 is a component of the replication checkpoint initiation machinery.

Authors:  Sandeep Kumar; Peter M Burgers
Journal:  Genes Dev       Date:  2013-01-25       Impact factor: 11.361

Review 6.  Replication stress and genome rearrangements: lessons from yeast models.

Authors:  Sarah Lambert; Antony M Carr
Journal:  Curr Opin Genet Dev       Date:  2012-12-22       Impact factor: 5.578

7.  Mec1 is one of multiple kinases that prime the Mcm2-7 helicase for phosphorylation by Cdc7.

Authors:  John C W Randell; Andy Fan; Clara Chan; Laura I Francis; Ryan C Heller; Kyriaki Galani; Stephen P Bell
Journal:  Mol Cell       Date:  2010-11-12       Impact factor: 17.970

8.  DNA-repair scaffolds dampen checkpoint signalling by counteracting the adaptor Rad9.

Authors:  Patrice Y Ohouo; Francisco M Bastos de Oliveira; Yi Liu; Chu Jian Ma; Marcus B Smolka
Journal:  Nature       Date:  2012-11-18       Impact factor: 49.962

9.  Checkpoint kinases and the INO80 nucleosome remodeling complex enhance global chromatin mobility in response to DNA damage.

Authors:  Andrew Seeber; Vincent Dion; Susan M Gasser
Journal:  Genes Dev       Date:  2013-09-12       Impact factor: 11.361

10.  Ddc2 mediates Mec1 activation through a Ddc1- or Dpb11-independent mechanism.

Authors:  Amitava Bandhu; John Kang; Kenzo Fukunaga; Greicy Goto; Katsunori Sugimoto
Journal:  PLoS Genet       Date:  2014-02-20       Impact factor: 5.917

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  55 in total

1.  Mrc1 and Rad9 cooperate to regulate initiation and elongation of DNA replication in response to DNA damage.

Authors:  Julien Bacal; María Moriel-Carretero; Benjamin Pardo; Antoine Barthe; Sushma Sharma; Andrei Chabes; Armelle Lengronne; Philippe Pasero
Journal:  EMBO J       Date:  2018-08-29       Impact factor: 11.598

2.  Profiling DNA damage-induced phosphorylation in budding yeast reveals diverse signaling networks.

Authors:  Chunshui Zhou; Andrew E H Elia; Maria L Naylor; Noah Dephoure; Bryan A Ballif; Gautam Goel; Qikai Xu; Aylwin Ng; Danny M Chou; Ramnik J Xavier; Steven P Gygi; Stephen J Elledge
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-13       Impact factor: 11.205

Review 3.  Multi-BRCT scaffolds use distinct strategies to support genome maintenance.

Authors:  Bingbing Wan; Lisa E Hang; Xiaolan Zhao
Journal:  Cell Cycle       Date:  2016-08-11       Impact factor: 4.534

Review 4.  Slx4 scaffolding in homologous recombination and checkpoint control: lessons from yeast.

Authors:  José R Cussiol; Diego Dibitetto; Achille Pellicioli; Marcus B Smolka
Journal:  Chromosoma       Date:  2016-05-10       Impact factor: 4.316

Review 5.  The INO80 remodeller in transcription, replication and repair.

Authors:  Jérôme Poli; Susan M Gasser; Manolis Papamichos-Chronakis
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-10-05       Impact factor: 6.237

Review 6.  The essential kinase ATR: ensuring faithful duplication of a challenging genome.

Authors:  Joshua C Saldivar; David Cortez; Karlene A Cimprich
Journal:  Nat Rev Mol Cell Biol       Date:  2017-08-16       Impact factor: 94.444

7.  Tel1 Activation by the MRX Complex Is Sufficient for Telomere Length Regulation but Not for the DNA Damage Response in Saccharomyces cerevisiae.

Authors:  Rebecca Keener; Carla J Connelly; Carol W Greider
Journal:  Genetics       Date:  2019-10-23       Impact factor: 4.562

8.  MaXLinker: Proteome-wide Cross-link Identifications with High Specificity and Sensitivity.

Authors:  Kumar Yugandhar; Ting-Yi Wang; Alden King-Yung Leung; Michael Charles Lanz; Ievgen Motorykin; Jin Liang; Elnur Elyar Shayhidin; Marcus Bustamante Smolka; Sheng Zhang; Haiyuan Yu
Journal:  Mol Cell Proteomics       Date:  2019-12-15       Impact factor: 5.911

9.  Nicotinamide Suppresses the DNA Damage Sensitivity of Saccharomyces cerevisiae Independently of Sirtuin Deacetylases.

Authors:  Anthony Rössl; Amanda Bentley-DeSousa; Yi-Chieh Tseng; Christine Nwosu; Michael Downey
Journal:  Genetics       Date:  2016-08-15       Impact factor: 4.562

10.  Inner nuclear membrane protein Lem2 facilitates Rad3-mediated checkpoint signaling under replication stress induced by nucleotide depletion in fission yeast.

Authors:  Yong-Jie Xu
Journal:  Cell Signal       Date:  2015-12-31       Impact factor: 4.315

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