Literature DB >> 25752236

A rapid, one step molecular identification of Trichoderma citrinoviride and Trichoderma reesei.

Dina B Saroj1, Shrinivas N Dengeti, Supriya Aher, Anil K Gupta.   

Abstract

Trichoderma species are widely used as production hosts for industrial enzymes. Identification of Trichoderma species requires a complex molecular biology based identification involving amplification and sequencing of multiple genes. Industrial laboratories are required to run identification tests repeatedly in cell banking procedures and also to prove absence of production host in the product. Such demands can be fulfilled by a brief method which enables confirmation of strain identity. This communication describes one step identification method for two common Trichoderma species; T. citrinoviride and T. reesei, based on identification of polymorphic region in the nucleotide sequence of translation elongation factor 1 alpha. A unique forward primer and common reverse primer resulted in 153 and 139 bp amplicon for T. citrinoviride and T. reesei, respectively. Simplification was further introduced by using mycelium as template for PCR amplification. Method described in this communication allows rapid, one step identification of two Trichoderma species.

Entities:  

Mesh:

Substances:

Year:  2015        PMID: 25752236     DOI: 10.1007/s11274-015-1839-9

Source DB:  PubMed          Journal:  World J Microbiol Biotechnol        ISSN: 0959-3993            Impact factor:   3.312


  10 in total

Review 1.  Phylogenetic species recognition and species concepts in fungi.

Authors:  J W Taylor; D J Jacobson; S Kroken; T Kasuga; D M Geiser; D S Hibbett; M C Fisher
Journal:  Fungal Genet Biol       Date:  2000-10       Impact factor: 3.495

2.  Species delimitation in fungal endophyte diversity studies and its implications in ecological and biogeographic inferences.

Authors:  Romina Gazis; Stephen Rehner; Priscila Chaverri
Journal:  Mol Ecol       Date:  2011-05-09       Impact factor: 6.185

3.  Molecular identification of Trichoderma species associated with Pleurotus ostreatus and natural substrates of the oyster mushroom.

Authors:  László Kredics; Sándor Kocsubé; László Nagy; Monika Komoń-Zelazowska; László Manczinger; Eniko Sajben; Adrienn Nagy; Csaba Vágvölgyi; Christian P Kubicek; Irina S Druzhinina; Lóránt Hatvani
Journal:  FEMS Microbiol Lett       Date:  2009-08-21       Impact factor: 2.742

4.  Primer-BLAST: a tool to design target-specific primers for polymerase chain reaction.

Authors:  Jian Ye; George Coulouris; Irena Zaretskaya; Ioana Cutcutache; Steve Rozen; Thomas L Madden
Journal:  BMC Bioinformatics       Date:  2012-06-18       Impact factor: 3.169

5.  ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases.

Authors:  Eva Bellemain; Tor Carlsen; Christian Brochmann; Eric Coissac; Pierre Taberlet; Håvard Kauserud
Journal:  BMC Microbiol       Date:  2010-07-09       Impact factor: 3.605

6.  Rapid identification of Aspergillus fumigatus within the section Fumigati.

Authors:  Rita Serrano; Leonor Gusmão; António Amorim; Ricardo Araujo
Journal:  BMC Microbiol       Date:  2011-04-21       Impact factor: 3.605

7.  Enzyme production by filamentous fungi: analysis of the secretome of Trichoderma reesei grown on unconventional carbon source.

Authors:  He Jun; Thomas Kieselbach; Leif J Jönsson
Journal:  Microb Cell Fact       Date:  2011-08-23       Impact factor: 5.328

8.  Molecular phylogeny and species delimitation in the section Longibrachiatum of Trichoderma.

Authors:  Irina S Druzhinina; Monika Komoń-Zelazowska; Adnan Ismaiel; Walter Jaklitsch; Temesgen Mullaw; Gary J Samuels; Christian P Kubicek
Journal:  Fungal Genet Biol       Date:  2012-03-01       Impact factor: 3.495

9.  DNA barcoding survey of Trichoderma diversity in soil and litter of the Colombian lowland Amazonian rainforest reveals Trichoderma strigosellum sp. nov. and other species.

Authors:  Carlos A López-Quintero; Lea Atanasova; A Esperanza Franco-Molano; Walter Gams; Monika Komon-Zelazowska; Bart Theelen; Wally H Müller; Teun Boekhout; Irina Druzhinina
Journal:  Antonie Van Leeuwenhoek       Date:  2013-07-25       Impact factor: 2.271

Review 10.  β -Glucosidases from the fungus trichoderma: an efficient cellulase machinery in biotechnological applications.

Authors:  Pragya Tiwari; B N Misra; Neelam S Sangwan
Journal:  Biomed Res Int       Date:  2013-08-01       Impact factor: 3.411

  10 in total
  2 in total

1.  Identification patterns of Trichoderma strains using morphological characteristics, phylogenetic analyses and lignocellulolytic activities.

Authors:  Azriah Asis; Saleh Ahmed Shahriar; Laila Naher; Suryani Saallah; Hasan Nudin Nur Fatihah; Vijay Kumar; Shafiquzzaman Siddiquee
Journal:  Mol Biol Rep       Date:  2021-04-20       Impact factor: 2.316

2.  Endophytic Trichoderma citrinoviride isolated from mountain-cultivated ginseng (Panax ginseng) has great potential as a biocontrol agent against ginseng pathogens.

Authors:  Young-Hwan Park; Ratnesh Chandra Mishra; Sunkyung Yoon; Hoki Kim; Changho Park; Sang-Tae Seo; Hanhong Bae
Journal:  J Ginseng Res       Date:  2018-04-04       Impact factor: 6.060

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.