| Literature DB >> 25743945 |
Dariush Nasrollahzadeh1, Reza Malekzadeh2, Alexander Ploner3, Ramin Shakeri2, Masoud Sotoudeh2, Saman Fahimi2, Siavosh Nasseri-Moghaddam2, Farin Kamangar4, Christian C Abnet5, Björn Winckler3, Farhad Islami6, Paolo Boffetta7, Paul Brennan8, Sanford M Dawsey5, Weimin Ye3.
Abstract
Observational studies revealed a relationship between changes in gastric mucosa and risk of esophageal squamous cell carcinoma (ESCC) which suggested a possible role for gastric microbiota in ESCC carcinogenesis. In this study we aimed to compare pattern of gastric corpus microbiota in ESCC with normal esophagus. Cases were included subjects with early ESCC (stage I-II) and esophageal squamous dysplasia (ESD) as the cancer precursor. Control groups included age and sex-matched subjects with mid-esophagus esophagitis (diseased-control), and histologically normal esophagus (healthy-control). DNA was extracted from snap-frozen gastric corpus tissues and 16S rRNA was sequenced on GS-FLX Titanium. After noise removal, an average of 3004 reads per sample was obtained from 93 subjects. We applied principal coordinate analysis to ordinate distances from beta diversity data. Pattern of gastric microbiota using Unifrac (p = 0.004) and weighted Unifrac distances (p = 0.018) statistically varied between cases and healthy controls. Sequences were aligned to SILVA database and Clostridiales and Erysipelotrichales orders were more abundant among cases after controling for multiple testing (p = 0.011). No such difference was observed between mid-esophagitis and healthy controls. This study is the first to show that composition of gastric corpus mucosal microbiota differs in early ESCC and ESD from healthy esophagus.Entities:
Mesh:
Year: 2015 PMID: 25743945 PMCID: PMC4351546 DOI: 10.1038/srep08820
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Characteristics of the subjects and microbiome reads among study groups
| Cases (ESCC and ESD) | Healthy Controls (normal esophagus) | Diseased controls (mid-esophageal esophagitis) | |
|---|---|---|---|
| Number of subjects | 37 | 37 | 17 |
| Male/female | 18/19 | 18/19 | 16/1 |
| Mean age (SD) | 64.5 (11.8) | 62.1 (16.3) | 63.6 (14.0) |
| Rural residence (%) | 25 (69) | 19 (54) | 6 (35) |
| Illiterate (%) | 30 (81) | 28 (76) | 6 (35) |
| Ever tobacco use (%) | 14 (38) | 12 (32) | 10 (59) |
| Ever alcohol use (%) | 1 (2.7) | 1 (2.7) | 1 (5.9) |
| Ever opium use (%) | 11 (29.7) | 14 (37.8) | 8 (47) |
| Mean DMFT score (SD) | 27.8 (6) | 25 (9) | 25 (10) |
| Mean sequences | 2969 | 2875 | 3047 |
| Mean Chao1 | 191 | 178 | 154 |
| Mean Shannon's | 2.4 | 1.4 | 1.9 |
ESCC: esophageal squamous cell carcinoma; ESD: esophageal squamous dysplasia; DMFT: diseased, missing and filled teeth.
Histopathologic characteristics of the gastric corpus among study groups
| Gastric corpus histology | Cases (ESCC and ESD) | Healthy controls (normal esophagus) | Diseased controls (mid-esophageal esophagitis) |
|---|---|---|---|
| Normal | 21 (56.7) | 19 (51.3) | 5 (29.4) |
| Chronic/active gastritis | |||
| Moderate | 15 (40.6) | 17 (46.0) | 11 (64.6) |
| Severe | 1 (2.7) | 1 (2.7) | 1 (6.0) |
| Atrophic gastritis | |||
| Moderate/Severe | 0 | 0 | 0 |
| None | 33 (89.2) | 32 (86.4) | 12 (70.6) |
| Intestinal | 4 (10.8) | 5 (13.6) | 5 (29.4) |
Figure 1Sequence data processing from filtered reads to operational taxonomic units (OTUs) formation.
Percentage of OTUs assigned to the Order level of taxonomy. OTUs with abundance of eight and less were not included.(cases: early esophageal squamous cell carcinoma and esophageal dysplasia, diseased-control: mid-esophageal esophagitis)
| Order | Cases (N = 37) | Healthy controls (N = 37) | P-value | FDR* | Diseased control (N = 17) | P-value | FDR* |
|---|---|---|---|---|---|---|---|
| Actinomycetales | 2.63 | 2.20 | 0.351 | 0.556 | 2.61 | 0.468 | 0.799 |
| Bacillales | 1.50 | 2.75 | 0.527 | 0.645 | 1.31 | 0.995 | 0.995 |
| Bacteroidales | 18.80 | 21.98 | 0.013 | 0.147 | 24.84 | 0.257 | 0.738 |
| Bifidobacteriales | 2.26 | 1.65 | 0.019 | 0.158 | 1.31 | 0.830 | 0.951 |
| Burkholderiales | 1.50 | 1.65 | 0.210 | 0.525 | 1.31 | 0.862 | 0.951 |
| Campylobacterales | 1.50 | 2.20 | 0.057 | 0.311 | 2.61 | 0.524 | 0.800 |
| CandidatedivisionOD1/SR1/TM7 | 3.01 | 2.75 | 0.575 | 0.655 | 2.61 | 0.866 | 0.951 |
| Caulobacterales | 0.38 | 0.55 | 0.500 | 0.634 | - | - | - |
| Clostridiales | 27.82 | 14.84 | 0.001 | 0.011 | 16.99 | 0.167 | 0.738 |
| Coriobacteriales | 1.13 | 1.10 | 0.359 | 0.556 | 1.31 | 0.034 | 0.716 |
| Corynebacteriales | 1.13 | 0.55 | 0.183 | 0.525 | 0.65 | - | - |
| Enterobacteriales | 1.88 | 0.55 | 0.371 | 0.556 | 0.65 | - | - |
| Erysipelotrichales | 1.50 | 0.55 | 0.001 | 0.011 | 0.65 | 0.298 | 0.738 |
| Firmicutes order | 0.38 | 0.55 | 0.054 | 0.311 | 0.65 | 0.356 | 0.738 |
| Flavobacteriales | 3.38 | 3.85 | 0.088 | 0.362 | 1.96 | 0.523 | 0.800 |
| Fusobacteriales | 5.26 | 7.69 | 0.266 | 0.556 | 5.23 | 0.116 | 0.738 |
| Lactobacillales | 8.65 | 13.19 | 0.695 | 0.764 | 14.38 | 0.912 | 0.951 |
| Micrococcales | 1.13 | 1.65 | 0.889 | 0.889 | 1.96 | 0.900 | 0.951 |
| Mycoplasmatales | 0.38 | 1.10 | 0.315 | 0.556 | 0.65 | - | - |
| Neisseriales | 1.50 | 2.20 | 0.498 | 0.634 | 2.61 | 0.230 | 0.738 |
| Pasteurellales | 4.14 | 6.04 | 0.216 | 0.525 | 6.54 | 0.417 | 0.755 |
| Pseudomonadales | 3.38 | 3.30 | 0.184 | 0.525 | 3.27 | 0.318 | 0.738 |
| Rhizobiales | 0.75 | 0.55 | 0.576 | 0.655 | - | - | - |
| Sphingobacteriales | 0.75 | 1.10 | 0.387 | 0.556 | 1.31 | 0.918 | 0.951 |
| Unclassified order | 2.26 | 3.30 | 0.727 | 0.774 | 1.31 | 0.679 | 0.951 |
| Xanthomonadales | 1.13 | 1.65 | 0.223 | 0.525 | 1.96 | 0.074 | 0.716 |
OTU: operational taxonomic unit; FDR: False discovery rate. In total, 1.90% of microbiota among cases, 0.55% among healthy controls, and 1.31% among diseased controls belonged to unique orders.
Figure 2Distribution of samples depicted by PCoA coordinates for Unifrac (A) and weighted Unifrac distances (B). (Filled circles: cases, empty rings: healthy controls) Variations in distance matrix explained by coordinates based on Unifrac (C) and weighted Unifrac (D).
Conditional logistic regression models of coordinates based on Unifrac and weighted Unifrac distances. Models compared cases (Early ESCC and ESD) with matched healthy controls
| Unifrac distance | Weighted Unifrac distance | |||||||
|---|---|---|---|---|---|---|---|---|
| Coordinate No. | AIC | Coordinate No. | AIC | |||||
| Full model | 10 | 47.85 | 0.0247 | --- | 10 | 55.09 | 0.139 | --- |
| Best model | 3 | 42.35 | 0.00358 | --- | 3 | 45.84 | 0.018 | --- |
| Best model components | Coordinate 1 | --- | --- | 0.013 | Coordinate 1 | --- | --- | 0.019 |
| Coordinate 4 | --- | --- | 0.150 | Coordinate 3 | --- | --- | 0.160 | |
| Coordinate 5 | --- | --- | 0.038 | Coordinate 5 | --- | --- | 0.100 | |
AIC: Akaike information criterion.
*P-values of comparing null model (without coordinates) to full model and best model.