Literature DB >> 25743694

Advances in chemical labeling of proteins in living cells.

Qi Yan1, Marcel P Bruchez.   

Abstract

The pursuit of quantitative biological information via imaging requires robust labeling approaches that can be used in multiple applications and with a variety of detectable colors and properties. In addition to conventional fluorescent proteins, chemists and biologists have come together to provide a range of approaches that combine dye chemistry with the convenience of genetic targeting. This hybrid-tagging approach amalgamates the rational design of properties available through synthetic dye chemistry with the robust biological targeting available with genetic encoding. In this review, we discuss the current range of approaches that have been exploited for dye targeting or for targeting and activation and some of the recent applications that are uniquely permitted by these hybrid-tagging approaches.

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Year:  2015        PMID: 25743694      PMCID: PMC4380784          DOI: 10.1007/s00441-015-2145-4

Source DB:  PubMed          Journal:  Cell Tissue Res        ISSN: 0302-766X            Impact factor:   5.249


  142 in total

Review 1.  Chemical labeling strategies for cell biology.

Authors:  Kevin M Marks; Garry P Nolan
Journal:  Nat Methods       Date:  2006-08       Impact factor: 28.547

2.  Semisynthetic fluorescent sensor proteins based on self-labeling protein tags.

Authors:  Matthias A Brun; Kui-Thong Tan; Eiji Nakata; Marlon J Hinner; Kai Johnsson
Journal:  J Am Chem Soc       Date:  2009-04-29       Impact factor: 15.419

3.  An eight residue fragment of an acyl carrier protein suffices for post-translational introduction of fluorescent pantetheinyl arms in protein modification in vitro and in vivo.

Authors:  Zhe Zhou; Alexander Koglin; Yu Wang; Andrew P McMahon; Christopher T Walsh
Journal:  J Am Chem Soc       Date:  2008-07-02       Impact factor: 15.419

4.  Redesigning an FKBP-ligand interface to generate chemical dimerizers with novel specificity.

Authors:  T Clackson; W Yang; L W Rozamus; M Hatada; J F Amara; C T Rollins; L F Stevenson; S R Magari; S A Wood; N L Courage; X Lu; F Cerasoli; M Gilman; D A Holt
Journal:  Proc Natl Acad Sci U S A       Date:  1998-09-01       Impact factor: 11.205

5.  Inhibitor mediated protein degradation.

Authors:  Marcus J C Long; Deviprasad R Gollapalli; Lizbeth Hedstrom
Journal:  Chem Biol       Date:  2012-05-25

6.  Direct visualization of protein association in living cells with complex-edited electron microscopy.

Authors:  Rachel J Dexter; Alanna Schepartz
Journal:  Angew Chem Int Ed Engl       Date:  2010-10-18       Impact factor: 15.336

7.  Short tetracysteine tags to beta-tubulin demonstrate the significance of small labels for live cell imaging.

Authors:  Martin Andresen; Rita Schmitz-Salue; Stefan Jakobs
Journal:  Mol Biol Cell       Date:  2004-10-06       Impact factor: 4.138

8.  A fluorogenic TMP-tag for high signal-to-background intracellular live cell imaging.

Authors:  Chaoran Jing; Virginia W Cornish
Journal:  ACS Chem Biol       Date:  2013-06-19       Impact factor: 5.100

9.  Fluorogenic dendrons with multiple donor chromophores as bright genetically targeted and activated probes.

Authors:  Christopher Szent-Gyorgyi; Brigitte F Schmidt; James A J Fitzpatrick; Marcel P Bruchez
Journal:  J Am Chem Soc       Date:  2010-08-18       Impact factor: 15.419

10.  Development of SNAP-tag fluorogenic probes for wash-free fluorescence imaging.

Authors:  Xiaoli Sun; Aihua Zhang; Brenda Baker; Luo Sun; Angela Howard; John Buswell; Damien Maurel; Anastasiya Masharina; Kai Johnsson; Christopher J Noren; Ming-Qun Xu; Ivan R Corrêa
Journal:  Chembiochem       Date:  2011-07-26       Impact factor: 3.164

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  14 in total

1.  Imaging and manipulating proteins in live cells through covalent labeling.

Authors:  Lin Xue; Iuliia A Karpenko; Julien Hiblot; Kai Johnsson
Journal:  Nat Chem Biol       Date:  2015-11-17       Impact factor: 15.040

2.  Super-Resolution Microscopy and Single-Protein Tracking in Live Bacteria Using a Genetically Encoded, Photostable Fluoromodule.

Authors:  Saumya Saurabh; Adam M Perez; Colin J Comerci; Lucy Shapiro; W E Moerner
Journal:  Curr Protoc Cell Biol       Date:  2017-06-19

3.  Membrane-Permeant, Environment-Sensitive Dyes Generate Biosensors within Living Cells.

Authors:  Christopher J MacNevin; Takashi Watanabe; Matthew Weitzman; Akash Gulyani; Sheryl Fuehrer; Nicholas K Pinkin; Xu Tian; Feng Liu; Jian Jin; Klaus M Hahn
Journal:  J Am Chem Soc       Date:  2019-04-23       Impact factor: 15.419

4.  Quantitative techniques for imaging cells and tissues.

Authors:  Christopher S von Bartheld; Fred S Wouters
Journal:  Cell Tissue Res       Date:  2015-04       Impact factor: 5.249

5.  Single-molecule localization microscopy.

Authors:  Mickaël Lelek; Melina T Gyparaki; Gerti Beliu; Florian Schueder; Juliette Griffié; Suliana Manley; Ralf Jungmann; Markus Sauer; Melike Lakadamyali; Christophe Zimmer
Journal:  Nat Rev Methods Primers       Date:  2021-06-03

Review 6.  Tutorial: guidance for quantitative confocal microscopy.

Authors:  James Jonkman; Claire M Brown; Graham D Wright; Kurt I Anderson; Alison J North
Journal:  Nat Protoc       Date:  2020-03-31       Impact factor: 13.491

Review 7.  Super-resolution microscopy demystified.

Authors:  Lothar Schermelleh; Alexia Ferrand; Thomas Huser; Christian Eggeling; Markus Sauer; Oliver Biehlmaier; Gregor P C Drummen
Journal:  Nat Cell Biol       Date:  2019-01-02       Impact factor: 28.824

8.  Multiexcitation Fluorogenic Labeling of Surface, Intracellular, and Total Protein Pools in Living Cells.

Authors:  Matharishwan Naganbabu; Lydia A Perkins; Yi Wang; Jeffery Kurish; Brigitte F Schmidt; Marcel P Bruchez
Journal:  Bioconjug Chem       Date:  2016-05-19       Impact factor: 4.774

Review 9.  Illuminating Messengers: An Update and Outlook on RNA Visualization in Bacteria.

Authors:  Lieke A van Gijtenbeek; Jan Kok
Journal:  Front Microbiol       Date:  2017-06-22       Impact factor: 5.640

Review 10.  Fluorogen-activating proteins: beyond classical fluorescent proteins.

Authors:  Shengnan Xu; Hai-Yu Hu
Journal:  Acta Pharm Sin B       Date:  2018-03-24       Impact factor: 11.413

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