Literature DB >> 25737596

The largest type study of Agaricales species to date: bringing identification and nomenclature of Phlegmacium (Cortinarius) into the DNA era.

K Liimatainen1, T Niskanen1, B Dima1, I Kytövuori2, J F Ammirati3, T G Frøslev4.   

Abstract

Cortinarius is a species-rich and morphologically challenging genus with a cosmopolitan distribution. Many names have not been used consistently and in some instances the same species has been described two or more times under separate names. This study focuses on subg. Phlegmacium as traditionally defined and includes species from boreal and temperate areas of the northern hemisphere. Our goals for this project were to: i) study type material to determine which species already have been described; ii) stabilize the use of Friesian and other older names by choosing a neo- or epitype; iii) describe new species that were discovered during the process of studying specimens; and iv) establish an accurate ITS barcoding database for Phlegmacium species. A total of 236 types representing 154 species were studied. Of these 114 species are described only once whereas 40 species had one ore more synonyms. Of the names studied only 61 were currently represented in GenBank. Neotypes are proposed for 21 species, and epitypes are designated for three species. In addition, 20 new species are described and six new combinations made. As a consequence ITS barcodes for 175 Cortinarius species are released.

Keywords:  Basidiomycota; DNA barcoding; ITS; diversity; taxonomy; typification

Year:  2014        PMID: 25737596      PMCID: PMC4312940          DOI: 10.3767/003158514X684681

Source DB:  PubMed          Journal:  Persoonia        ISSN: 0031-5850            Impact factor:   11.051


  20 in total

1.  MrBayes 3: Bayesian phylogenetic inference under mixed models.

Authors:  Fredrik Ronquist; John P Huelsenbeck
Journal:  Bioinformatics       Date:  2003-08-12       Impact factor: 6.937

2.  MUSCLE: multiple sequence alignment with high accuracy and high throughput.

Authors:  Robert C Edgar
Journal:  Nucleic Acids Res       Date:  2004-03-19       Impact factor: 16.971

3.  Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi.

Authors:  Conrad L Schoch; Keith A Seifert; Sabine Huhndorf; Vincent Robert; John L Spouge; C André Levesque; Wen Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-27       Impact factor: 11.205

4.  Lower level relationships in the mushroom genus Cortinarius (Basidiomycota, Agaricales): a comparison of RPB1, RPB2, and ITS phylogenies.

Authors:  T G Frøslev; P B Matheny; D S Hibbett
Journal:  Mol Phylogenet Evol       Date:  2005-08-08       Impact factor: 4.286

5.  jModelTest: phylogenetic model averaging.

Authors:  David Posada
Journal:  Mol Biol Evol       Date:  2008-04-08       Impact factor: 16.240

6.  Cortinarius sect. Armillati in northern Europe.

Authors:  Tuula Niskanen; Ilkka Kytövuori; Kare Liimatainen
Journal:  Mycologia       Date:  2011-04-15       Impact factor: 2.696

7.  Cortinarius section Sanguinei in North America.

Authors:  Tuula Niskanen; Kare Liimatainen; Joseph F Ammirati; Karen Hughes
Journal:  Mycologia       Date:  2012-09-06       Impact factor: 2.696

8.  The species of Cortinarius, section Bovini, associated with conifers in northern Europe.

Authors:  Tuula Niskanen; Ilkka Kytövuori; Kare Liimatainen; Håkan Lindström
Journal:  Mycologia       Date:  2013-05-24       Impact factor: 2.696

9.  Cortinarius sect. Brunnei (Basidiomycota, Agaricales) in North Europe.

Authors:  Tuula Niskanen; Ilkka Kytövuori; Kare Liimatainen
Journal:  Mycol Res       Date:  2008-11-05

10.  Phylogenetic relationships in Cortinarius, section Calochroi, inferred from nuclear DNA sequences.

Authors:  Sigisfredo Garnica; Michael Weiss; Bernhard Oertel; Joseph Ammirati; Franz Oberwinkler
Journal:  BMC Evol Biol       Date:  2009-01-02       Impact factor: 3.260

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  9 in total

1.  Host and habitat filtering in seedling root-associated fungal communities: taxonomic and functional diversity are altered in 'novel' soils.

Authors:  Brian J Pickles; Monika A Gorzelak; D Scott Green; Keith N Egger; Hugues B Massicotte
Journal:  Mycorrhiza       Date:  2015-02-20       Impact factor: 3.387

2.  Cortinarius subgenus Leprocybe, unexpected diversity and significant differences in species compositions between western and eastern North America.

Authors:  J Ammirati; K Liimatainen; D Bojantchev; U Peintner; R Kuhnert-Finkernagel; C Cripps; B Dentinger; T Niskanen
Journal:  Persoonia       Date:  2021-05-27       Impact factor: 11.658

3.  Resurrection of Cortinarius coalescens: taxonomy, chemistry, and ecology.

Authors:  Jan Borovička; Simone Braeuer; Anna Žigová; Milan Gryndler; Bálint Dima; Walter Goessler; Tobias G Frøslev; Jan Kameník; Reinhold Kärcher
Journal:  Mycol Prog       Date:  2017-09       Impact factor: 2.847

4.  Cortinarius section Bicolores and section Saturnini (Basidiomycota, Agaricales), a morphogenetic overview of European and North American species.

Authors:  K Liimatainen; X Carteret; B Dima; I Kytövuori; A Bidaud; P Reumaux; T Niskanen; J F Ammirati; J-M Bellanger
Journal:  Persoonia       Date:  2017-08-10       Impact factor: 11.051

5.  Diversity of Chroogomphus (Gomphidiaceae, Boletales) in Europe, and typification of C. rutilus.

Authors:  Ross Scambler; Tuula Niskanen; Boris Assyov; A Martyn Ainsworth; Jean-Michel Bellanger; Michael Loizides; Pierre-Arthur Moreau; Paul M Kirk; Kare Liimatainen
Journal:  IMA Fungus       Date:  2018-09-05       Impact factor: 3.515

6.  Evaluation of five regions as DNA barcodes for identification of Lepista species (Tricholomataceae, Basidiomycota) from China.

Authors:  Siyu Wang; Hongbo Guo; JiaJia Li; Wei Li; Qin Wang; Xiaodan Yu
Journal:  PeerJ       Date:  2019-07-15       Impact factor: 2.984

7.  Fourteen Unrecorded Species of Agaricales Underw. (Agaricomycetes, Basidiomycota) from the Republic of Korea.

Authors:  Shinnam Yoo; Yoonhee Cho; Ji Seon Kim; Minkyeong Kim; Young Woon Lim
Journal:  Mycobiology       Date:  2022-08-09       Impact factor: 1.946

8.  Fungal Systematics and Evolution: FUSE 3.

Authors:  Irmgard Krisai-Greilhuber; Yun Chen; Sana Jabeen; Hugo Madrid; Seonju Marincowitz; Abdul Razaq; Hana Ševčíková; Hermann Voglmayr; Kenan Yazici; André Aptroot; Ali Aslan; Teun Boekhout; Jan Borovička; Pedro W Crous; Sobia Ilyas; Fahimeh Jami; Yu-Lan Jiang; Abdul Nasir Khalid; Anna Kolecka; Tereza Konvalinková; Chada Norphanphoun; Shabnum Shaheen; Yong Wang; Michael J Wingfield; Shi-Ping Wu; Yue-Ming Wu; Jie-Ying Yu
Journal:  Sydowia       Date:  2017-12-18

9.  Loose Ends in the Cortinarius Phylogeny: Five New Myxotelamonoid Species Indicate a High Diversity of These Ectomycorrhizal Fungi with South American Nothofagaceae.

Authors:  María Eugenia Salgado Salomón; Carolina Barroetaveña; Tuula Niskanen; Kare Liimatainen; Matthew E Smith; Ursula Peintner
Journal:  Life (Basel)       Date:  2021-05-05
  9 in total

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