Literature DB >> 25732852

Polyphosphoinositide binding domains: Key to inositol lipid biology.

Gerald R V Hammond1, Tamas Balla2.   

Abstract

Polyphosphoinositides (PPIn) are an important family of phospholipids located on the cytoplasmic leaflet of eukaryotic cell membranes. Collectively, they are critical for the regulation of many aspects of membrane homeostasis and signaling, with notable relevance to human physiology and disease. This regulation is achieved through the selective interaction of these lipids with hundreds of cellular proteins, and thus the capability to study these localized interactions is crucial to understanding their functions. In this review, we discuss current knowledge of the principle types of PPIn-protein interactions, focusing on specific lipid-binding domains. We then discuss how these domains have been re-tasked by biologists as molecular probes for these lipids in living cells. Finally, we describe how the knowledge gained with these probes, when combined with other techniques, has led to the current view of the lipids' localization and function in eukaryotes, focusing mainly on animal cells. This article is part of a Special Issue entitled Phosphoinositides. Published by Elsevier B.V.

Entities:  

Keywords:  Fluorescence imaging; Membrane; PH-domain; PX-domain; Phosphoinositide; Phospholipase C

Mesh:

Substances:

Year:  2015        PMID: 25732852      PMCID: PMC4380703          DOI: 10.1016/j.bbalip.2015.02.013

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  170 in total

1.  A novel HPLC-based approach makes possible the spatial characterization of cellular PtdIns5P and other phosphoinositides.

Authors:  Deborah Sarkes; Lucia E Rameh
Journal:  Biochem J       Date:  2010-05-27       Impact factor: 3.857

2.  Osh proteins regulate phosphoinositide metabolism at ER-plasma membrane contact sites.

Authors:  Christopher J Stefan; Andrew G Manford; Daniel Baird; Jason Yamada-Hanff; Yuxin Mao; Scott D Emr
Journal:  Cell       Date:  2011-02-04       Impact factor: 41.582

Review 3.  The Beclin 1-VPS34 complex--at the crossroads of autophagy and beyond.

Authors:  Sarah F Funderburk; Qing Jun Wang; Zhenyu Yue
Journal:  Trends Cell Biol       Date:  2010-03-29       Impact factor: 20.808

4.  High-affinity binding of phosphatidylinositol 4-phosphate by Legionella pneumophila DrrA.

Authors:  Stefan Schoebel; Wulf Blankenfeldt; Roger S Goody; Aymelt Itzen
Journal:  EMBO Rep       Date:  2010-07-09       Impact factor: 8.807

5.  A PH domain in the Arf GTPase-activating protein (GAP) ARAP1 binds phosphatidylinositol 3,4,5-trisphosphate and regulates Arf GAP activity independently of recruitment to the plasma membranes.

Authors:  Fanny Campa; Hye-Young Yoon; Vi Luan Ha; Zsofia Szentpetery; Tamas Balla; Paul A Randazzo
Journal:  J Biol Chem       Date:  2009-08-07       Impact factor: 5.157

6.  Kinase associated-1 domains drive MARK/PAR1 kinases to membrane targets by binding acidic phospholipids.

Authors:  Katarina Moravcevic; Jeannine M Mendrola; Karl R Schmitz; Yu-Hsiu Wang; David Slochower; Paul A Janmey; Mark A Lemmon
Journal:  Cell       Date:  2010-12-10       Impact factor: 41.582

7.  Acute manipulation of Golgi phosphoinositides to assess their importance in cellular trafficking and signaling.

Authors:  Zsofia Szentpetery; Peter Várnai; Tamas Balla
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-19       Impact factor: 11.205

8.  Structural basis of wedging the Golgi membrane by FAPP pleckstrin homology domains.

Authors:  Marc Lenoir; Unal Coskun; Michal Grzybek; Xinwang Cao; Sabine B Buschhorn; Jonathan James; Kai Simons; Michael Overduin
Journal:  EMBO Rep       Date:  2010-03-19       Impact factor: 8.807

9.  Quantification of PtdInsP3 molecular species in cells and tissues by mass spectrometry.

Authors:  Jonathan Clark; Karen E Anderson; Veronique Juvin; Trevor S Smith; Fredrik Karpe; Michael J O Wakelam; Len R Stephens; Phillip T Hawkins
Journal:  Nat Methods       Date:  2011-01-30       Impact factor: 28.547

10.  Live cell imaging with protein domains capable of recognizing phosphatidylinositol 4,5-bisphosphate; a comparative study.

Authors:  Zsofia Szentpetery; Andras Balla; Yeun Ju Kim; Mark A Lemmon; Tamas Balla
Journal:  BMC Cell Biol       Date:  2009-09-21       Impact factor: 4.241

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  98 in total

1.  BRET-monitoring of the dynamic changes of inositol lipid pools in living cells reveals a PKC-dependent PtdIns4P increase upon EGF and M3 receptor activation.

Authors:  József T Tóth; Gergő Gulyás; Dániel J Tóth; András Balla; Gerald R V Hammond; László Hunyady; Tamás Balla; Péter Várnai
Journal:  Biochim Biophys Acta       Date:  2015-12-12

2.  Study of Legionella Effector Domains Revealed Novel and Prevalent Phosphatidylinositol 3-Phosphate Binding Domains.

Authors:  Nimrod Nachmias; Tal Zusman; Gil Segal
Journal:  Infect Immun       Date:  2019-05-21       Impact factor: 3.441

Review 3.  Quantifying lipid changes in various membrane compartments using lipid binding protein domains.

Authors:  Péter Várnai; Gergő Gulyás; Dániel J Tóth; Mira Sohn; Nivedita Sengupta; Tamas Balla
Journal:  Cell Calcium       Date:  2016-12-31       Impact factor: 6.817

4.  Quantification of Genetically Encoded Lipid Biosensors.

Authors:  Rachel C Wills; Jonathan Pacheco; Gerald R V Hammond
Journal:  Methods Mol Biol       Date:  2021

5.  Label-Free Quantification of Phosphoinositides in Drosophila by Mass Spectrometry.

Authors:  Avishek Ghosh; Padinjat Raghu
Journal:  Methods Mol Biol       Date:  2021

6.  Molecular determinants of the N-terminal acetyltransferase Naa60 anchoring to the Golgi membrane.

Authors:  Henriette Aksnes; Marianne Goris; Øyvind Strømland; Adrian Drazic; Qaiser Waheed; Nathalie Reuter; Thomas Arnesen
Journal:  J Biol Chem       Date:  2017-02-14       Impact factor: 5.157

7.  Imaging the Nanoscale Distribution of Phosphoinositides in the Cell Plasma Membrane with Single-Molecule Localization Super-Resolution Microscopy.

Authors:  Fan Fan; Chen Ji; Xuelin Lou
Journal:  Methods Mol Biol       Date:  2021

8.  A Real-Time Phosphatidylinositol 4-Phosphate 5-Kinase Assay Using Fluorescence Spectroscopy.

Authors:  Taki Nishimura
Journal:  Methods Mol Biol       Date:  2021

9.  In Vivo Imaging of Diacylglycerol at the Cytoplasmic Leaflet of Plant Membranes.

Authors:  Joop E M Vermeer; Ringo van Wijk; Joachim Goedhart; Niko Geldner; Joanne Chory; Theodorus W J Gadella; Teun Munnik
Journal:  Plant Cell Physiol       Date:  2017-07-01       Impact factor: 4.927

Review 10.  Features of the Phosphatidylinositol Cycle and its Role in Signal Transduction.

Authors:  Richard M Epand
Journal:  J Membr Biol       Date:  2016-06-08       Impact factor: 1.843

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