Literature DB >> 25730857

Structural assembly of the signaling competent ERK2-RSK1 heterodimeric protein kinase complex.

Anita Alexa1, Gergő Gógl2, Gábor Glatz1, Ágnes Garai3, András Zeke1, János Varga3, Erika Dudás4, Norbert Jeszenői5, Andrea Bodor4, Csaba Hetényi6, Attila Reményi7.   

Abstract

Mitogen-activated protein kinases (MAPKs) bind and activate their downstream kinase substrates, MAPK-activated protein kinases (MAPKAPKs). Notably, extracellular signal regulated kinase 2 (ERK2) phosphorylates ribosomal S6 kinase 1 (RSK1), which promotes cellular growth. Here, we determined the crystal structure of an RSK1 construct in complex with its activator kinase. The structure captures the kinase-kinase complex in a precatalytic state where the activation loop of the downstream kinase (RSK1) faces the enzyme's (ERK2) catalytic site. Molecular dynamics simulation was used to show how this heterodimer could shift into a signaling-competent state. This structural analysis combined with biochemical and cellular studies on MAPK→MAPKAPK signaling showed that the interaction between the MAPK binding linear motif (residing in a disordered kinase domain extension) and the ERK2 "docking" groove plays the major role in making an encounter complex. This interaction holds kinase domains proximal as they "readjust," whereas generic kinase domain surface contacts bring them into a catalytically competent state.

Entities:  

Keywords:  ERK2; RSK1; protein kinase; signal transduction; structural biology

Mesh:

Substances:

Year:  2015        PMID: 25730857      PMCID: PMC4352816          DOI: 10.1073/pnas.1417571112

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  38 in total

1.  A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations.

Authors:  Yong Duan; Chun Wu; Shibasish Chowdhury; Mathew C Lee; Guoming Xiong; Wei Zhang; Rong Yang; Piotr Cieplak; Ray Luo; Taisung Lee; James Caldwell; Junmei Wang; Peter Kollman
Journal:  J Comput Chem       Date:  2003-12       Impact factor: 3.376

2.  Catalytically active MAP KAP kinase 2 structures in complex with staurosporine and ADP reveal differences with the autoinhibited enzyme.

Authors:  Kathryn W Underwood; Kevin D Parris; Elizabeth Federico; Lidia Mosyak; Robert M Czerwinski; Tania Shane; Meggin Taylor; Kristine Svenson; Yan Liu; Chu-Lai Hsiao; Scott Wolfrom; Michelle Maguire; Karl Malakian; Jean-Baptiste Telliez; Lih-Ling Lin; Ronald W Kriz; Jasbir Seehra; William S Somers; Mark L Stahl
Journal:  Structure       Date:  2003-06       Impact factor: 5.006

3.  Structural insights into RIP3-mediated necroptotic signaling.

Authors:  Tian Xie; Wei Peng; Chuangye Yan; Jianping Wu; Xinqi Gong; Yigong Shi
Journal:  Cell Rep       Date:  2013-10-03       Impact factor: 9.423

4.  GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit.

Authors:  Sander Pronk; Szilárd Páll; Roland Schulz; Per Larsson; Pär Bjelkmar; Rossen Apostolov; Michael R Shirts; Jeremy C Smith; Peter M Kasson; David van der Spoel; Berk Hess; Erik Lindahl
Journal:  Bioinformatics       Date:  2013-02-13       Impact factor: 6.937

Review 5.  Mitogen-activated protein kinase pathways mediated by ERK, JNK, and p38 protein kinases.

Authors:  Gary L Johnson; Razvan Lapadat
Journal:  Science       Date:  2002-12-06       Impact factor: 47.728

6.  Face-to-face, pak-to-pak.

Authors:  Kimberly A Malecka; Jeffrey R Peterson
Journal:  Structure       Date:  2011-12-07       Impact factor: 5.006

7.  Identification of regulatory phosphorylation sites in mitogen-activated protein kinase (MAPK)-activated protein kinase-1a/p90rsk that are inducible by MAPK.

Authors:  K N Dalby; N Morrice; F B Caudwell; J Avruch; P Cohen
Journal:  J Biol Chem       Date:  1998-01-16       Impact factor: 5.157

8.  Molecular basis of MAPK-activated protein kinase 2:p38 assembly.

Authors:  Andre White; Christopher A Pargellis; Joey M Studts; Brian G Werneburg; Bennett T Farmer
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-29       Impact factor: 11.205

9.  Activation segment exchange: a common mechanism of kinase autophosphorylation?

Authors:  Antony W Oliver; Stefan Knapp; Laurence H Pearl
Journal:  Trends Biochem Sci       Date:  2007-07-12       Impact factor: 13.807

10.  A model of a MAPK•substrate complex in an active conformation: a computational and experimental approach.

Authors:  Sunbae Lee; Mangalika Warthaka; Chunli Yan; Tamer S Kaoud; Andrea Piserchio; Ranajeet Ghose; Pengyu Ren; Kevin N Dalby
Journal:  PLoS One       Date:  2011-04-11       Impact factor: 3.240

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  14 in total

1.  Mapping the binding interface of ERK and transcriptional repressor Capicua using photocrosslinking.

Authors:  Alan S Futran; Saw Kyin; Stanislav Y Shvartsman; A James Link
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-29       Impact factor: 11.205

Review 2.  Disordered Protein Kinase Regions in Regulation of Kinase Domain Cores.

Authors:  Gergő Gógl; Alexandr P Kornev; Attila Reményi; Susan S Taylor
Journal:  Trends Biochem Sci       Date:  2019-01-02       Impact factor: 13.807

3.  Phenotypic Characterization of a Comprehensive Set of MAPK1/ERK2 Missense Mutants.

Authors:  Lisa Brenan; Aleksandr Andreev; Ofir Cohen; Sasha Pantel; Atanas Kamburov; Davide Cacchiarelli; Nicole S Persky; Cong Zhu; Mukta Bagul; Eva M Goetz; Alex B Burgin; Levi A Garraway; Gad Getz; Tarjei S Mikkelsen; Federica Piccioni; David E Root; Cory M Johannessen
Journal:  Cell Rep       Date:  2016-10-18       Impact factor: 9.423

Review 4.  Targeting ERK beyond the boundaries of the kinase active site in melanoma.

Authors:  Rachel M Sammons; Ranajeet Ghose; Kenneth Y Tsai; Kevin N Dalby
Journal:  Mol Carcinog       Date:  2019-06-12       Impact factor: 4.784

5.  Rewiring of RSK-PDZ Interactome by Linear Motif Phosphorylation.

Authors:  Gergő Gógl; Beáta Biri-Kovács; Fabien Durbesson; Pau Jane; Yves Nomine; Camille Kostmann; Viktória Bilics; Márton Simon; Attila Reményi; Renaud Vincentelli; Gilles Trave; László Nyitray
Journal:  J Mol Biol       Date:  2019-02-03       Impact factor: 5.469

Review 6.  Evolution of a dynamic molecular switch.

Authors:  Susan S Taylor; Hiruy S Meharena; Alexandr P Kornev
Journal:  IUBMB Life       Date:  2019-05-06       Impact factor: 3.885

7.  Structural Basis of Ribosomal S6 Kinase 1 (RSK1) Inhibition by S100B Protein: MODULATION OF THE EXTRACELLULAR SIGNAL-REGULATED KINASE (ERK) SIGNALING CASCADE IN A CALCIUM-DEPENDENT WAY.

Authors:  Gergő Gógl; Anita Alexa; Bence Kiss; Gergely Katona; Mihály Kovács; Andrea Bodor; Attila Reményi; László Nyitray
Journal:  J Biol Chem       Date:  2015-11-02       Impact factor: 5.157

Review 8.  MAPK-Activated Protein Kinases (MKs): Novel Insights and Challenges.

Authors:  Matthias Gaestel
Journal:  Front Cell Dev Biol       Date:  2016-01-08

9.  Systematic discovery of linear binding motifs targeting an ancient protein interaction surface on MAP kinases.

Authors:  András Zeke; Tomas Bastys; Anita Alexa; Ágnes Garai; Bálint Mészáros; Klára Kirsch; Zsuzsanna Dosztányi; Olga V Kalinina; Attila Reményi
Journal:  Mol Syst Biol       Date:  2015-11-03       Impact factor: 11.429

10.  Structural insights into ubiquitin phosphorylation by PINK1.

Authors:  Kei Okatsu; Yusuke Sato; Koji Yamano; Noriyuki Matsuda; Lumi Negishi; Akiko Takahashi; Atsushi Yamagata; Sakurako Goto-Ito; Masaki Mishima; Yutaka Ito; Toshihiko Oka; Keiji Tanaka; Shuya Fukai
Journal:  Sci Rep       Date:  2018-07-10       Impact factor: 4.379

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