| Literature DB >> 25729620 |
Kalthoum Tizaoui1, Wajih Kaabachi1, Kamel Hamzaoui1, Agnès Hamzaoui2.
Abstract
PURPOSE: Asthma is a complex disease, with contributions from multiple genes, various genetic backgrounds, and environmental factors. Many human epidemiological studies have demonstrated that single nucleotide polymorphisms (SNPs) in Toll-like receptor (TLR) genes are inconsistently associated with asthma risk. Some have demonstrated differences concerning the study design and effect size, and conflicting results have been reported. A meta-analysis is necessary to determine the magnitude of this association.Entities:
Keywords: Asthma; SNPs; TLR genes; association; meta-analysis
Year: 2014 PMID: 25729620 PMCID: PMC4341334 DOI: 10.4168/aair.2015.7.2.130
Source DB: PubMed Journal: Allergy Asthma Immunol Res ISSN: 2092-7355 Impact factor: 5.764
Fig. 1Flow diagram of the systematic review and meta-analysis literature search results.
Characteristics of the reviewed studies on SNPs in TLR genes and asthma risk
| Reference | Ethnicity | Age: Case/control | Gender | Gene | Polymorphism | Case | Control | Results |
|---|---|---|---|---|---|---|---|---|
| Lazarus 2003 | European-American | Matched | Matched | rs5743836 T/C | 64 | 114 | SA | |
| Noguchi 2004 | Japanese (Chinese) | Children/46.9 | Matched | c. -191 G>A | 133 | 186 | NS | |
| c. 597 T>C | 133 | 188 | NS | |||||
| c. 1350 T>C | 134 | 190 | NS | |||||
| -7A | 135 | 189 | NS | |||||
| IVS3 +71 C>A | 134 | 188 | NS | |||||
| c. 1377 C>T | 133 | 189 | NS | |||||
| c. 1635 G>A | 132 | 189 | NS | |||||
| Tantisira 2004 | African-American | Matched | Matched | Ser249Pro C>T | 56 | 97 | SA | |
| Lazarus 2004 | European-American | Matched | Matched | c.+1031 G>T | 506 | 514 | SA | |
| c.+2322 A>G | 505 | 513 | SA | |||||
| Yang 2004 | English (Caucasian) | Matched | Matched | rs4986790 A>G | 320 | 184 | NS | |
| Matched | Matched | rs4986790 A>G | 309 | 184 | NS | |||
| Matched | Matched | rs4986790 A>G | 185 | 184 | NS | |||
| Hoffjan 2005 | German (Caucasian) | 38/59 | Matched | Ser249Pro C>T | 68 | 212 | NS | |
| 9.5/59 | Ser249Pro C>T | 132 | 212 | NS | ||||
| Smit 2007 | Danish (Caucasian) | 19.2/matched | Matched | rs4696480 A>T | 100 | 87 | NS | |
| rs5743704 C>A | 100 | 87 | NS | |||||
| rs5743708 C>T | 100 | 87 | NS | |||||
| rs4986790 A>G | 100 | 87 | NS | |||||
| rs4986791 C>T | 100 | 87 | NS | |||||
| Caravalho 2008 | European (Caucasians) | 57.6±11.8/not mentioned | Matched | rs5743708 G>A | 14 | 80 | NS | |
| rs4986790 A>G | 14 | 80 | NS | |||||
| rs5743836 T>C | 14 | 80 | NS | |||||
| Lachheb 2008 | African Caucasian | 10.5/8 | Matched | rs5743708 C>T | 210 | 224 | NS | |
| rs4986790 A>G | 210 | 224 | NS | |||||
| rs4986791 C>T | 210 | 224 | NS | |||||
| rs5743836 T>C | 210 | 224 | SA | |||||
| rs187084 T>C | 210 | 224 | NS | |||||
| Larocca 2008 | Venezuelan (American) | 44.6±15.22/42.63±13.89 | Matched | rs4986790 A>G | 100 | 100 | NS | |
| rs4986791 C>T | 100 | 100 | NS | |||||
| Bjørnvold 2009 | Norwegian (Caucasian) | Children | Matched | Rs3804100 T>C | 108 | 494 | SA | |
| Rs3804099T>C | 108 | 494 | NS | |||||
| Hseih 2009 | Taiwanese (Asian) | 7.2±2.4/Children | Matched | rs10983755 A>G | 117 | 60 | NS | |
| rs1927914 C>T | 117 | 60 | NS | |||||
| Zhang 2009 | Chinese (Asian) | 39.80±14.23/34.27±13.31 | Male | rs5935436 C>T | 135 | 200 | SA | |
| rs3761623 A>G | 135 | 200 | NS | |||||
| rs3764880 G>A | 135 | 200 | NS | |||||
| 39.80±14.23/34.27±13.31 | Female | rs5935436 C>T | 183 | 152 | NS | |||
| rs3761623 A>G | 183 | 151 | SA | |||||
| rs3764880 G>A | 182 | 152 | SA | |||||
| Qian 2010 | Chinese (Asian) | 39.80/38.26 | Matched | rs4833095 C>T | 318 | 351 | NS | |
| rs7656411 G>T | 317 | 351 | SA | |||||
| rs5743831 A>G | 318 | 352 | NS | |||||
| rs5743808 T>C | 318 | 351 | NS | |||||
| rs2381289 C>T | 318 | 352 | NS | |||||
| rs11466651 G>A | 318 | 352 | NS | |||||
| rs11466655 A>G | 318 | 351 | NS | |||||
| rs4504265 C>A | 317 | 349 | NS | |||||
| Zhang 2011 | Chinese (Asian) | 39.80/38.26 | Matched | rs1927914 T>C | 318 | 350 | SA* | |
| rs10983755 G>A | 318 | 351 | ||||||
| rs11536879 A>G | 304 | 348 | ||||||
| rs1927907 G>A | 314 | 334 | ||||||
| Palikhe 2011 | Korean (Asian) | 43.1±15.2/32.1±12.7 | Matched | rs3775296 G>T | 254 | 274 | NS | |
| rs3775291 G>A | 254 | 274 | NS | |||||
| Vorvonko 2011 | Russian (Caucasian) | Adults/38.5±10.4 | Matched | rs4986790 A>G | 283 | 227 | NS | |
| Qian 2011 | Chinese (Asian) | 1.9-11.6/matched | Matched | rs187084 C/T | 312 | 339 | NS | |
| Hussein 2012 | African Caucasian | 8.4±2.6/10.1±2.3 | Matched | rs5743708 G>A | 500 | 250 | SA* | |
| rs4986790 A>G | 500 | 251 | ||||||
| Şahin 2014 | Turkish (Caucasian) | 36±12.42/43±7.68 | Matched | rs4986790 A>G | 131 | 75 | NS | |
| rs4986791 C>T | 131 | 75 | SA |
NS, non significant association; SA, significant association; SA*, significant association with asthma severity.
Fig. 2Forest plot of the association between TLR4 Asp299Gly and asthma risk: AA vs AG+GG. The forest plot shows the odds ratios (ORs) and respective 95% confidence intervals (CIs) for the studies included in the meta-analysis. For each study in the forest plot, the area of the black square is proportional to the study weight, and the horizontal bar represents the 95% CI. Z score: the standardized expression of a value in terms of its relative position in the full distribution of values.
Association of TLR4 Asp299Gly A/G, TLR4 Thr399Ile C>T, TLR2 Arg753Gln G/A and TLR9 -1237 T/C with asthma risk
| TLRs | Genetic model | OR | Egger | |||
|---|---|---|---|---|---|---|
| Recessive | AA vs AG+GG | 0.814 (0.652-1.016) | 0.000 | 0.25 | ||
| Homozygous | GG+AA vs AG | 0.835 (0.666-1.047) | 0.118 | 0.000 | 0.40 | |
| Dominant | AA+AG vs GG | 0.857 (0.297-2.477) | 0.776 | 0.000 | 0.42 | |
| Codominant* | AA vs GG | 0.897 (0.597-1.346) | 0.599 | 0.000 | 0.12 | |
| Codominant* | AG vs GG | 0.831 (0,663-1.042) | 0.110 | 0.000 | 0.40 | |
| Codominant* | AA vs AG | 0.972 (0.320-2.953) | 0.960 | 0.000 | 0.28 | |
| Allele contrast | A allele vs G allele | 0.814 (0.659-1.005) | 0.000 | 0.05 | ||
| Recessive | CC vs TC+TT | 0.784 (0.571-1.075) | 0.130 | 0.00 | 0.15 | |
| Homozygous | CC+TT vs TC | 1.315 (0.688-2.513) | 0.408 | 0.00 | 0.45 | |
| Dominant | CC+TC vs TT | 0.708 (0.111-4522) | 0.715 | 0.00 | 0.05 | |
| Codominant | CC vs TT | 1.223 (0.655-2.286) | 0.527 | 0.00 | 0.34 | |
| Codominant | CT vs TT | 1.306 (0.683-2.497) | 0.419 | 0.00 | 0.45 | |
| Codominant | CC vs TC | 0.398 (0.053-3.006) | 0.372 | 0.00 | 0.03 | |
| Allele contrast | C allele vs T allele | 1.132 (0.623-2.056) | 0.684 | 0.00 | 0.34 | |
| Recessive | GG vs GA+AA | 0.968 (0.441-2.123) | 0.935 | 18.71 | 0.37 | |
| Homozygous | GG+AA vs GA | 2.476 (0.483-12.698) | 0.277 | 57.34 | 0.30 | |
| Dominant | GG+GA vs AA | 0.100 (0.013-0.789) | 0.00 | - | ||
| Codominant | GG vs AA | 0.102 (0.013-0.803) | 0.00 | - | ||
| Codominant | GA vs AA | 0.01 (0.001-0.312) | 24.25 | - | ||
| Codominant | GG vs GA | 2.451 (0.483-12.441) | 0.279 | 56.82 | 0.30 | |
| Allele contrast | G allele vs A allele | 0.635 (0.228-1.771) | 0.385 | 52.24 | 0.47 | |
| Recessive | TT vs TC+CC | 0.950 (0.570-1.583) | 0.223 | 33.33 | 0.41 | |
| Homozygous | TT+CC vs TC | 1.267 (0.867-1.852) | 0.222 | 0.00 | 0.39 | |
| Dominant | TT+TC vs CC | 0.684 (0.090-5.192) | 0.714 | 85.96 | - | |
| Codominant* | TT vs CC | 0.408 (0.163-1.021) | 30.95 | - | ||
| Codominant* | TC vs CC | 0.498 (0.206-1.202) | 0.121 | 16.83 | - | |
| Codominant* | TT vs TC | 0.876 (0.584-1.315) | 0.525 | 0.00 | 0.12 | |
| Allele contrast | T allele vs C allele | 0.689 (0.471-1.007) | 18.73 | 0.27 |
TLR4 Asp299Gly (rs 4986790); TLR4 Thr399Ile (rs4986791); TLR2 Arg753Gln (rs5743708); TLR9 -1237 (rs187084); Bold: significant P value (<0.05). TLR4 Asp299Gly polymorphism: one study removed,60 OR=0.803 (0.647-0.997); P=0.047 in the allele contrast model. TLR2 Arg753Gln polymorphism: one study removed,61 OR=4.460 (1.213-16.396); P=0.024 in the homozygous model; one study removed,61 OR=4.365 (1.2265-15.536); P=0.023 in the GG vs GA codominant model; one study removed,60 OR=0.402 (0.199-0.811); P=0.011 in the allele contrast model.
n, number of studies; OR, odds ratio; I2, heterogeneity test.
*best-fitted genetic model.
Fig. 3Forest plot of the association between TLR4 Thr399Ile and asthma risk: C allele vs T allele. The forest plot shows the ORs and respective 95% CIs for the studies included in the meta-analysis. For each study in the forest plot, the area of the black square is proportional to the study weight, and the horizontal bar represents the 95% CI. Z score: the standardized expression of a value in terms of its relative position in the full distribution of values.
Fig. 4Forest plot of the association between TLR2 Arg753Gln and asthma: GG+AA vs GA. The forest plot shows the ORs and respective 95% CIs for the studies included in the meta-analysis. For each study in the forest plot, the area of the black square is proportional to the study weight, and the horizontal bar represents the 95% CI. Z score: the standardized expression of a value in terms of its relative position in the full distribution of values.
Fig. 5Forest plot of the association between TLR9 -1237 and asthma: T allele vs C allele. The forest plot shows the (ORs and respective 95% CIs for the studies included in the meta-analysis. For each study in the forest plot, the area of the black square is proportional to the study weight, and the horizontal bar represents the 95% CI. Z score: the standardized expression of a value in terms of its relative position in the full distribution of values.