Literature DB >> 25728500

Genetic screens and functional genomics using CRISPR/Cas9 technology.

Ella Hartenian1, John G Doench.   

Abstract

Functional genomics attempts to understand the genome by perturbing the flow of information from DNA to RNA to protein, in order to learn how gene dysfunction leads to disease. CRISPR/Cas9 technology is the newest tool in the geneticist's toolbox, allowing researchers to edit DNA with unprecedented ease, speed and accuracy, and representing a novel means to perform genome-wide genetic screens to discover gene function. In this review, we first summarize the discovery and characterization of CRISPR/Cas9, and then compare it to other genome engineering technologies. We discuss its initial use in screening applications, with a focus on optimizing on-target activity and minimizing off-target effects. Finally, we comment on future challenges and opportunities afforded by this technology.
© 2015 FEBS.

Keywords:  CRISPR; Cas9; RNAi; functional genomics; gene editing; genetic screen; off-target effects; on-target activity; pooled screens; sgRNA

Mesh:

Substances:

Year:  2015        PMID: 25728500     DOI: 10.1111/febs.13248

Source DB:  PubMed          Journal:  FEBS J        ISSN: 1742-464X            Impact factor:   5.542


  22 in total

1.  Come together, right now….

Authors:  Herman Yeger
Journal:  J Cell Commun Signal       Date:  2015-07-25       Impact factor: 5.782

Review 2.  Am I ready for CRISPR? A user's guide to genetic screens.

Authors:  John G Doench
Journal:  Nat Rev Genet       Date:  2017-12-04       Impact factor: 53.242

Review 3.  Beyond Hemoglobin: Screening for Malaria Host Factors.

Authors:  Elizabeth S Egan
Journal:  Trends Genet       Date:  2017-12-14       Impact factor: 11.639

Review 4.  Loss-of-function genetic tools for animal models: cross-species and cross-platform differences.

Authors:  Benjamin E Housden; Matthias Muhar; Matthew Gemberling; Charles A Gersbach; Didier Y R Stainier; Geraldine Seydoux; Stephanie E Mohr; Johannes Zuber; Norbert Perrimon
Journal:  Nat Rev Genet       Date:  2016-10-31       Impact factor: 53.242

5.  Investigation of the functional role of human Interleukin-8 gene haplotypes by CRISPR/Cas9 mediated genome editing.

Authors:  Manjunatha R Benakanakere; Livia S Finoti; Urara Tanaka; Gregory R Grant; Raquel M Scarel-Caminaga; Denis F Kinane
Journal:  Sci Rep       Date:  2016-08-08       Impact factor: 4.379

6.  Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9.

Authors:  John G Doench; Nicolo Fusi; Meagan Sullender; Mudra Hegde; Emma W Vaimberg; Jennifer Listgarten; Katherine F Donovan; Ian Smith; Zuzana Tothova; Craig Wilen; Robert Orchard; Herbert W Virgin; David E Root
Journal:  Nat Biotechnol       Date:  2016-01-18       Impact factor: 54.908

Review 7.  CRISPR guide RNA design for research applications.

Authors:  Stephanie E Mohr; Yanhui Hu; Benjamin Ewen-Campen; Benjamin E Housden; Raghuvir Viswanatha; Norbert Perrimon
Journal:  FEBS J       Date:  2016-06-22       Impact factor: 5.542

8.  Validation of Synthetic CRISPR Reagents as a Tool for Arrayed Functional Genomic Screening.

Authors:  Jenille Tan; Scott E Martin
Journal:  PLoS One       Date:  2016-12-28       Impact factor: 3.240

9.  CRISPR/Cas9 Screens Reveal Requirements for Host Cell Sulfation and Fucosylation in Bacterial Type III Secretion System-Mediated Cytotoxicity.

Authors:  Carlos J Blondel; Joseph S Park; Troy P Hubbard; Alline R Pacheco; Carole J Kuehl; Michael J Walsh; Brigid M Davis; Benjamin E Gewurz; John G Doench; Matthew K Waldor
Journal:  Cell Host Microbe       Date:  2016-07-21       Impact factor: 21.023

10.  A pooled CRISPR/AsCpf1 screen using paired gRNAs to induce genomic deletions in Chinese hamster ovary cells.

Authors:  Valerie Schmieder; Neža Novak; Heena Dhiman; Ly Ngoc Nguyen; Evgenija Serafimova; Gerald Klanert; Martina Baumann; Helene Faustrup Kildegaard; Nicole Borth
Journal:  Biotechnol Rep (Amst)       Date:  2021-06-20
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