Literature DB >> 25723921

Radiation damage to macromolecules: kill or cure?

Elspeth F Garman1, Martin Weik2.   

Abstract

Radiation damage induced by X-ray beams during macromolecular diffraction experiments remains an issue of concern in structural biology. While advances in our understanding of this phenomenon, driven in part by a series of workshops in this area, undoubtedly have been and are still being made, there are still questions to be answered. Eight papers in this volume give a flavour of ongoing investigations, addressing various issues. These range over: a proposed new metric derived from atomic B-factors for identifying potentially damaged amino acid residues, a study of the relative damage susceptibility of protein and DNA in a DNA/protein complex, a report of an indication of specific radiation damage to a protein determined from data collected using an X-ray free-electron laser (FEL), an account of the challenges in FEL raw diffraction data analysis, an exploration of the possibilities of using radiation damage induced phasing to solve structures using FELs, simulations of radiation damage as a function of FEL temporal pulse profiles, results on the influence of radiation damage during scanning X-ray diffraction measurements and, lastly, consideration of strategies for minimizing radiation damage during SAXS experiments. In this short introduction, these contributions are briefly placed in the context of other current work on radiation damage in the field.

Entities:  

Keywords:  FEL; SAXS; X-ray radiation damage; macromolecular crystallography; radiation damage induced phasing; simulations

Mesh:

Substances:

Year:  2015        PMID: 25723921     DOI: 10.1107/S160057751500380X

Source DB:  PubMed          Journal:  J Synchrotron Radiat        ISSN: 0909-0495            Impact factor:   2.616


  14 in total

1.  Qualitative Analyses of Polishing and Precoating FIB Milled Crystals for MicroED.

Authors:  Michael W Martynowycz; Wei Zhao; Johan Hattne; Grant J Jensen; Tamir Gonen
Journal:  Structure       Date:  2019-08-15       Impact factor: 5.006

2.  X-ray absorption spectroscopy using a self-seeded soft X-ray free-electron laser.

Authors:  Thomas Kroll; Jan Kern; Markus Kubin; Daniel Ratner; Sheraz Gul; Franklin D Fuller; Heike Löchel; Jacek Krzywinski; Alberto Lutman; Yuantao Ding; Georgi L Dakovski; Stefan Moeller; Joshua J Turner; Roberto Alonso-Mori; Dennis L Nordlund; Jens Rehanek; Christian Weniger; Alexander Firsov; Maria Brzhezinskaya; Ruchira Chatterjee; Benedikt Lassalle-Kaiser; Raymond G Sierra; Hartawan Laksmono; Ethan Hill; Andrew Borovik; Alexei Erko; Alexander Föhlisch; Rolf Mitzner; Vittal K Yachandra; Junko Yano; Philippe Wernet; Uwe Bergmann
Journal:  Opt Express       Date:  2016-10-03       Impact factor: 3.894

Review 3.  Crystallographic phasing from weak anomalous signals.

Authors:  Qun Liu; Wayne A Hendrickson
Journal:  Curr Opin Struct Biol       Date:  2015-09-30       Impact factor: 6.809

4.  Towards characterization of photo-excited electron transfer and catalysis in natural and artificial systems using XFELs.

Authors:  R Alonso-Mori; K Asa; U Bergmann; A S Brewster; R Chatterjee; J K Cooper; H M Frei; F D Fuller; E Goggins; S Gul; H Fukuzawa; D Iablonskyi; M Ibrahim; T Katayama; T Kroll; Y Kumagai; B A McClure; J Messinger; K Motomura; K Nagaya; T Nishiyama; C Saracini; Y Sato; N K Sauter; D Sokaras; T Takanashi; T Togashi; K Ueda; W W Weare; T-C Weng; M Yabashi; V K Yachandra; I D Young; A Zouni; J F Kern; J Yano
Journal:  Faraday Discuss       Date:  2016-12-16       Impact factor: 4.008

Review 5.  Hybrid Approaches to Structural Characterization of Conformational Ensembles of Complex Macromolecular Systems Combining NMR Residual Dipolar Couplings and Solution X-ray Scattering.

Authors:  Vincenzo Venditti; Timothy K Egner; G Marius Clore
Journal:  Chem Rev       Date:  2016-01-07       Impact factor: 60.622

Review 6.  Metalloprotein structures at ambient conditions and in real-time: biological crystallography and spectroscopy using X-ray free electron lasers.

Authors:  Jan Kern; Vittal K Yachandra; Junko Yano
Journal:  Curr Opin Struct Biol       Date:  2015-09-02       Impact factor: 6.809

Review 7.  Contemporary Use of Anomalous Diffraction in Biomolecular Structure Analysis.

Authors:  Qun Liu; Wayne A Hendrickson
Journal:  Methods Mol Biol       Date:  2017

8.  Serial crystallography captures enzyme catalysis in copper nitrite reductase at atomic resolution from one crystal.

Authors:  Sam Horrell; Svetlana V Antonyuk; Robert R Eady; S Samar Hasnain; Michael A Hough; Richard W Strange
Journal:  IUCrJ       Date:  2016-06-15       Impact factor: 4.769

9.  OH cleavage from tyrosine: debunking a myth.

Authors:  Charles S Bury; Ian Carmichael; Elspeth F Garman
Journal:  J Synchrotron Radiat       Date:  2017-01-01       Impact factor: 2.616

10.  Identification of the point of diminishing returns in high-multiplicity data collection for sulfur SAD phasing.

Authors:  Selina L S Storm; Fabio Dall'Antonia; Gleb Bourenkov; Thomas R Schneider
Journal:  J Synchrotron Radiat       Date:  2017-01-01       Impact factor: 2.616

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