Literature DB >> 25719827

Determining the epigenome using DNA alone.

Coby Viner1, Michael M Hoffman2.   

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Year:  2015        PMID: 25719827     DOI: 10.1038/nmeth.3291

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


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  10 in total

1.  Distinct localization of histone H3 acetylation and H3-K4 methylation to the transcription start sites in the human genome.

Authors:  Gangning Liang; Joy C Y Lin; Vivian Wei; Christine Yoo; Jonathan C Cheng; Carvell T Nguyen; Daniel J Weisenberger; Gerda Egger; Daiya Takai; Felicidad A Gonzales; Peter A Jones
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-03       Impact factor: 11.205

Review 2.  Charting histone modifications and the functional organization of mammalian genomes.

Authors:  Vicky W Zhou; Alon Goren; Bradley E Bernstein
Journal:  Nat Rev Genet       Date:  2010-11-30       Impact factor: 53.242

Review 3.  Chromatin modifications and their function.

Authors:  Tony Kouzarides
Journal:  Cell       Date:  2007-02-23       Impact factor: 41.582

4.  Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome.

Authors:  Nathaniel D Heintzman; Rhona K Stuart; Gary Hon; Yutao Fu; Christina W Ching; R David Hawkins; Leah O Barrera; Sara Van Calcar; Chunxu Qu; Keith A Ching; Wei Wang; Zhiping Weng; Roland D Green; Gregory E Crawford; Bing Ren
Journal:  Nat Genet       Date:  2007-02-04       Impact factor: 38.330

5.  Human DNA methylomes at base resolution show widespread epigenomic differences.

Authors:  Ryan Lister; Mattia Pelizzola; Robert H Dowen; R David Hawkins; Gary Hon; Julian Tonti-Filippini; Joseph R Nery; Leonard Lee; Zhen Ye; Que-Minh Ngo; Lee Edsall; Jessica Antosiewicz-Bourget; Ron Stewart; Victor Ruotti; A Harvey Millar; James A Thomson; Bing Ren; Joseph R Ecker
Journal:  Nature       Date:  2009-10-14       Impact factor: 49.962

Review 6.  Epigenetic inheritance: histone bookmarks across generations.

Authors:  Eric I Campos; James M Stafford; Danny Reinberg
Journal:  Trends Cell Biol       Date:  2014-09-18       Impact factor: 20.808

7.  Extensive variation in chromatin states across humans.

Authors:  Maya Kasowski; Sofia Kyriazopoulou-Panagiotopoulou; Fabian Grubert; Judith B Zaugg; Anshul Kundaje; Yuling Liu; Alan P Boyle; Qiangfeng Cliff Zhang; Fouad Zakharia; Damek V Spacek; Jingjing Li; Dan Xie; Anthony Olarerin-George; Lars M Steinmetz; John B Hogenesch; Manolis Kellis; Serafim Batzoglou; Michael Snyder
Journal:  Science       Date:  2013-10-17       Impact factor: 47.728

8.  Efficient genome engineering in human pluripotent stem cells using Cas9 from Neisseria meningitidis.

Authors:  Zhonggang Hou; Yan Zhang; Nicholas E Propson; Sara E Howden; Li-Fang Chu; Erik J Sontheimer; James A Thomson
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-12       Impact factor: 11.205

9.  Transcription factor binding predicts histone modifications in human cell lines.

Authors:  Dan Benveniste; Hans-Joachim Sonntag; Guido Sanguinetti; Duncan Sproul
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-03       Impact factor: 11.205

10.  Predicting the human epigenome from DNA motifs.

Authors:  John W Whitaker; Zhao Chen; Wei Wang
Journal:  Nat Methods       Date:  2014-09-21       Impact factor: 28.547

  10 in total

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