Literature DB >> 25712084

Next generation sequencing in sporadic retinoblastoma patients reveals somatic mosaicism.

Sara Amitrano1,2, Annabella Marozza2, Serena Somma1,2, Valentina Imperatore1, Theodora Hadjistilianou3, Sonia De Francesco3, Paolo Toti4, Daniela Galimberti5, Ilaria Meloni1, Francesco Cetta6, Pietro Piu7, Chiara Di Marco1,2, Laura Dosa1,2, Caterina Lo Rizzo1,2, Giulia Carignani1,2, Maria Antonietta Mencarelli1,2, Francesca Mari1,2, Alessandra Renieri1,2, Francesca Ariani1.   

Abstract

In about 50% of sporadic cases of retinoblastoma, no constitutive RB1 mutations are detected by conventional methods. However, recent research suggests that, at least in some of these cases, there is somatic mosaicism with respect to RB1 normal and mutant alleles. The increased availability of next generation sequencing improves our ability to detect the exact percentage of patients with mosaicism. Using this technology, we re-tested a series of 40 patients with sporadic retinoblastoma: 10 of them had been previously classified as constitutional heterozygotes, whereas in 30 no RB1 mutations had been found in lymphocytes. In 3 of these 30 patients, we have now identified low-level mosaic variants, varying in frequency between 8 and 24%. In 7 out of the 10 cases previously classified as heterozygous from testing blood cells, we were able to test additional tissues (ocular tissues, urine and/or oral mucosa): in three of them, next generation sequencing has revealed mosaicism. Present results thus confirm that a significant fraction (6/40; 15%) of sporadic retinoblastoma cases are due to postzygotic events and that deep sequencing is an efficient method to unambiguously distinguish mosaics. Re-testing of retinoblastoma patients through next generation sequencing can thus provide new information that may have important implications with respect to genetic counseling and family care.

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Year:  2015        PMID: 25712084      PMCID: PMC4613478          DOI: 10.1038/ejhg.2015.6

Source DB:  PubMed          Journal:  Eur J Hum Genet        ISSN: 1018-4813            Impact factor:   4.246


  30 in total

1.  Genome sequencing in microfabricated high-density picolitre reactors.

Authors:  Marcel Margulies; Michael Egholm; William E Altman; Said Attiya; Joel S Bader; Lisa A Bemben; Jan Berka; Michael S Braverman; Yi-Ju Chen; Zhoutao Chen; Scott B Dewell; Lei Du; Joseph M Fierro; Xavier V Gomes; Brian C Godwin; Wen He; Scott Helgesen; Chun Heen Ho; Chun He Ho; Gerard P Irzyk; Szilveszter C Jando; Maria L I Alenquer; Thomas P Jarvie; Kshama B Jirage; Jong-Bum Kim; James R Knight; Janna R Lanza; John H Leamon; Steven M Lefkowitz; Ming Lei; Jing Li; Kenton L Lohman; Hong Lu; Vinod B Makhijani; Keith E McDade; Michael P McKenna; Eugene W Myers; Elizabeth Nickerson; John R Nobile; Ramona Plant; Bernard P Puc; Michael T Ronan; George T Roth; Gary J Sarkis; Jan Fredrik Simons; John W Simpson; Maithreyan Srinivasan; Karrie R Tartaro; Alexander Tomasz; Kari A Vogt; Greg A Volkmer; Shally H Wang; Yong Wang; Michael P Weiner; Pengguang Yu; Richard F Begley; Jonathan M Rothberg
Journal:  Nature       Date:  2005-07-31       Impact factor: 49.962

2.  Patterns of missplicing caused by RB1 gene mutations in patients with retinoblastoma and association with phenotypic expression.

Authors:  Katherine Zhang; Inga Nowak; Diane Rushlow; Brenda L Gallie; Dietmar R Lohmann
Journal:  Hum Mutat       Date:  2008-04       Impact factor: 4.878

3.  Parallel sequencing used in detection of mosaic mutations: comparison with four diagnostic DNA screening techniques.

Authors:  Anna Rohlin; Josephine Wernersson; Yvonne Engwall; Leif Wiklund; Jan Björk; Margareta Nordling
Journal:  Hum Mutat       Date:  2009-06       Impact factor: 4.878

Review 4.  Developmental basis of retinal-specific induction of cancer by RB mutation.

Authors:  B L Gallie; C Campbell; H Devlin; A Duckett; J A Squire
Journal:  Cancer Res       Date:  1999-04-01       Impact factor: 12.701

5.  A deep intronic mutation in the RB1 gene leads to intronic sequence exonisation.

Authors:  Catherine Dehainault; Dorothée Michaux; Sabine Pagès-Berhouet; Virginie Caux-Moncoutier; François Doz; Laurence Desjardins; Jérôme Couturier; Philippe Parent; Dominique Stoppa-Lyonnet; Marion Gauthier-Villars; Claude Houdayer
Journal:  Eur J Hum Genet       Date:  2007-02-14       Impact factor: 4.246

6.  Array comparative genomic hybridization in retinoma and retinoblastoma tissues.

Authors:  Katia Sampieri; Mariangela Amenduni; Filomena Tiziana Papa; Eleni Katzaki; Maria Antonietta Mencarelli; Annabella Marozza; Maria Carmela Epistolato; Paolo Toti; Stefano Lazzi; Mirella Bruttini; Roberta De Filippis; Sonia De Francesco; Ilaria Longo; Ilaria Meloni; Francesca Mari; Antonio Acquaviva; Theodora Hadjistilianou; Alessandra Renieri; Francesca Ariani
Journal:  Cancer Sci       Date:  2009-01-29       Impact factor: 6.716

7.  Detection of mosaic RB1 mutations in families with retinoblastoma.

Authors:  Diane Rushlow; Beata Piovesan; Katherine Zhang; Nadia L Prigoda-Lee; Mellone N Marchong; Robin D Clark; Brenda L Gallie
Journal:  Hum Mutat       Date:  2009-05       Impact factor: 4.878

8.  Loss of RB1 induces non-proliferative retinoma: increasing genomic instability correlates with progression to retinoblastoma.

Authors:  Helen Dimaras; Vikas Khetan; William Halliday; Marija Orlic; Nadia L Prigoda; Beata Piovesan; Paula Marrano; Timothy W Corson; Ralph C Eagle; Jeremy A Squire; Brenda L Gallie
Journal:  Hum Mol Genet       Date:  2008-01-22       Impact factor: 6.150

9.  Novel cases of D-2-hydroxyglutaric aciduria with IDH1 or IDH2 mosaic mutations identified by amplicon deep sequencing.

Authors:  Benjamin Nota; Eline M Hamilton; Daoud Sie; Senay Ozturk; Silvy J M van Dooren; Matilde R Fernandez Ojeda; Cornelis Jakobs; Ernst Christensen; Edwin P Kirk; Jolanta Sykut-Cegielska; Allan M Lund; Marjo S van der Knaap; Gajja S Salomons
Journal:  J Med Genet       Date:  2013-09-18       Impact factor: 5.941

10.  RB1 gene mutation up-date, a meta-analysis based on 932 reported mutations available in a searchable database.

Authors:  José R Valverde; Javier Alonso; Itziar Palacios; Angel Pestaña
Journal:  BMC Genet       Date:  2005-11-04       Impact factor: 2.797

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  16 in total

Review 1.  Somatic mosaicism: on the road to cancer.

Authors:  Luis C Fernández; Miguel Torres; Francisco X Real
Journal:  Nat Rev Cancer       Date:  2015-12-18       Impact factor: 60.716

2.  Parent-of-origin effect of hypomorphic pathogenic variants and somatic mosaicism impact on phenotypic expression of retinoblastoma.

Authors:  Valentina Imperatore; Anna Maria Pinto; Elisa Gelli; Eva Trevisson; Valeria Morbidoni; Elisa Frullanti; Theodora Hadjistilianou; Sonia De Francesco; Paolo Toti; Elena Gusson; Gaia Roversi; Andrea Accogli; Valeria Capra; Maria Antonietta Mencarelli; Alessandra Renieri; Francesca Ariani
Journal:  Eur J Hum Genet       Date:  2018-04-17       Impact factor: 4.246

3.  Simultaneous identification of clinically relevant RB1 mutations and copy number alterations in aqueous humor of retinoblastoma eyes.

Authors:  Liya Xu; Lishuang Shen; Ashley Polski; Rishvanth K Prabakar; Rachana Shah; Rima Jubran; Jonathan W Kim; Jacklyn Biegel; Peter Kuhn; David Cobrinik; James Hicks; Xiaowu Gai; Jesse L Berry
Journal:  Ophthalmic Genet       Date:  2020-08-17       Impact factor: 1.803

Review 4.  FAP Associated Papillary Thyroid Carcinoma: A Peculiar Subtype of Familial Nonmedullary Thyroid Cancer.

Authors:  Francesco Cetta
Journal:  Patholog Res Int       Date:  2015-12-01

5.  Exome sequences versus sequential gene testing in the UK highly specialised Service for Limb Girdle Muscular Dystrophy.

Authors:  Elizabeth Harris; Ana Topf; Rita Barresi; Judith Hudson; Helen Powell; James Tellez; Debbie Hicks; Anna Porter; Marta Bertoli; Teresinha Evangelista; Chiara Marini-Betollo; Ólafur Magnússon; Monkol Lek; Daniel MacArthur; Kate Bushby; Hanns Lochmüller; Volker Straub
Journal:  Orphanet J Rare Dis       Date:  2017-09-06       Impact factor: 4.123

6.  Spectrum of germline RB1 mutations and clinical manifestations in retinoblastoma patients from Thailand.

Authors:  Duangnate Rojanaporn; Tatpong Boontawon; Takol Chareonsirisuthigul; Onrampa Thanapanpanich; Taweevat Attaseth; Duangporn Saengwimol; Usanarat Anurathapan; Tharikarn Sujirakul; Rossukon Kaewkhaw; Suradej Hongeng
Journal:  Mol Vis       Date:  2018-12-09       Impact factor: 2.367

Review 7.  The RB1 Story: Characterization and Cloning of the First Tumor Suppressor Gene.

Authors:  Jesse L Berry; Ashley Polski; Webster K Cavenee; Thaddeus P Dryja; A Linn Murphree; Brenda L Gallie
Journal:  Genes (Basel)       Date:  2019-11-01       Impact factor: 4.096

8.  Retinoblastoma genetics screening and clinical management.

Authors:  Himika Gupta; Sivasankar Malaichamy; Ashwin Mallipatna; Sakthivel Murugan; Nallathambi Jeyabalan; Vishnu Suresh Babu; Anuprita Ghosh; Arkasubhra Ghosh; Sam Santhosh; Somasekar Seshagiri; Vedam L Ramprasad; Govindasamy Kumaramanickavel
Journal:  BMC Med Genomics       Date:  2021-07-22       Impact factor: 3.063

Review 9.  Systemic and ocular manifestations of a patient with mosaic ARID1A-associated Coffin-Siris syndrome and review of select mosaic conditions with ophthalmic manifestations.

Authors:  Virginia Miraldi Utz; Diana S Brightman; Monica A Sandoval; Robert B Hufnagel; Howard M Saal
Journal:  Am J Med Genet C Semin Med Genet       Date:  2020-09-05       Impact factor: 3.359

10.  Mutation spectrum of RB1 mutations in retinoblastoma cases from Singapore with implications for genetic management and counselling.

Authors:  Swati Tomar; Raman Sethi; Gangadhara Sundar; Thuan Chong Quah; Boon Long Quah; Poh San Lai
Journal:  PLoS One       Date:  2017-06-02       Impact factor: 3.240

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