Literature DB >> 25705757

Validating a new methodology for optical probe design and image registration in fNIRS studies.

Sobanawartiny Wijeakumar, John P Spencer, Kevin Bohache, David A Boas, Vincent A Magnotta.   

Abstract

Functional near-infrared spectroscopy (fNIRS) is an imaging technique that relies on the principle of shining near-infrared light through tissue to detect changes in hemodynamic activation. An important methodological issue encountered is the creation of optimized probe geometry for fNIRS recordings. Here, across three experiments, we describe and validate a processing pipeline designed to create an optimized, yet scalable probe geometry based on selected regions of interest (ROIs) from the functional magnetic resonance imaging (fMRI) literature. In experiment 1, we created a probe geometry optimized to record changes in activation from target ROIs important for visual working memory. Positions of the sources and detectors of the probe geometry on an adult head were digitized using a motion sensor and projected onto a generic adult atlas and a segmented head obtained from the subject's MRI scan. In experiment 2, the same probe geometry was scaled down to fit a child's head and later digitized and projected onto the generic adult atlas and a segmented volume obtained from the child's MRI scan. Using visualization tools and by quantifying the amount of intersection between target ROIs and channels, we show that out of 21 ROIs, 17 and 19 ROIs intersected with fNIRS channels from the adult and child probe geometries, respectively. Further, both the adult atlas and adult subject-specific MRI approaches yielded similar results and can be used interchangeably. However, results suggest that segmented heads obtained from MRI scans be used for registering children's data. Finally, in experiment 3, we further validated our processing pipeline by creating a different probe geometry designed to record from target ROIs involved in language and motor processing.

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Year:  2015        PMID: 25705757      PMCID: PMC4431570          DOI: 10.1016/j.neuroimage.2014.11.022

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  34 in total

1.  Centiles for adult head circumference.

Authors:  K M Bushby; T Cole; J N Matthews; J A Goodship
Journal:  Arch Dis Child       Date:  1992-10       Impact factor: 3.791

2.  Regional and hemispheric asymmetries of cerebral hemodynamic and oxygen metabolism in newborns.

Authors:  Pei-Yi Lin; Nadège Roche-Labarbe; Mathieu Dehaes; Angela Fenoglio; P Ellen Grant; Maria Angela Franceschini
Journal:  Cereb Cortex       Date:  2012-02-10       Impact factor: 5.357

3.  Localization of hemodynamic responses to simple visual stimulation: an fNIRS study.

Authors:  Sobanawartiny Wijeakumar; Uma Shahani; William A Simpson; Daphne L McCulloch
Journal:  Invest Ophthalmol Vis Sci       Date:  2012-04-30       Impact factor: 4.799

4.  Spatial registration of multichannel multi-subject fNIRS data to MNI space without MRI.

Authors:  Archana K Singh; Masako Okamoto; Haruka Dan; Valer Jurcak; Ippeita Dan
Journal:  Neuroimage       Date:  2005-10-01       Impact factor: 6.556

5.  A quantitative comparison of NIRS and fMRI across multiple cognitive tasks.

Authors:  Xu Cui; Signe Bray; Daniel M Bryant; Gary H Glover; Allan L Reiss
Journal:  Neuroimage       Date:  2010-11-01       Impact factor: 6.556

6.  Neural and vascular responses to fused binocular stimuli: a VEP and fNIRS study.

Authors:  Sobanawartiny Wijeakumar; Uma Shahani; Daphne L McCulloch; William A Simpson
Journal:  Invest Ophthalmol Vis Sci       Date:  2012-08-27       Impact factor: 4.799

7.  Working memory, reading, and mathematical skills in children with developmental coordination disorder.

Authors:  Tracy Packiam Alloway
Journal:  J Exp Child Psychol       Date:  2006-09-29

8.  Validating atlas-guided DOT: a comparison of diffuse optical tomography informed by atlas and subject-specific anatomies.

Authors:  Robert J Cooper; Matteo Caffini; Jay Dubb; Qianqian Fang; Anna Custo; Daisuke Tsuzuki; Bruce Fischl; William Wells; Ippeita Dan; David A Boas
Journal:  Neuroimage       Date:  2012-05-23       Impact factor: 6.556

9.  Minimizing within-experiment and within-group effects in Activation Likelihood Estimation meta-analyses.

Authors:  Peter E Turkeltaub; Simon B Eickhoff; Angela R Laird; Mick Fox; Martin Wiener; Peter Fox
Journal:  Hum Brain Mapp       Date:  2011-02-08       Impact factor: 5.038

10.  Effects of source-detector distance of near infrared spectroscopy on the measurement of the cortical hemodynamic response in infants.

Authors:  Gentaro Taga; Fumitaka Homae; Hama Watanabe
Journal:  Neuroimage       Date:  2007-08-15       Impact factor: 6.556

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  18 in total

1.  Evaluating motion processing algorithms for use with functional near-infrared spectroscopy data from young children.

Authors:  Lourdes M Delgado Reyes; Kevin Bohache; Sobanawartiny Wijeakumar; John P Spencer
Journal:  Neurophotonics       Date:  2018-05-22       Impact factor: 3.593

2.  Optical imaging and spectroscopy for the study of the human brain: status report.

Authors:  Hasan Ayaz; Wesley B Baker; Giles Blaney; David A Boas; Heather Bortfeld; Kenneth Brady; Joshua Brake; Sabrina Brigadoi; Erin M Buckley; Stefan A Carp; Robert J Cooper; Kyle R Cowdrick; Joseph P Culver; Ippeita Dan; Hamid Dehghani; Anna Devor; Turgut Durduran; Adam T Eggebrecht; Lauren L Emberson; Qianqian Fang; Sergio Fantini; Maria Angela Franceschini; Jonas B Fischer; Judit Gervain; Joy Hirsch; Keum-Shik Hong; Roarke Horstmeyer; Jana M Kainerstorfer; Tiffany S Ko; Daniel J Licht; Adam Liebert; Robert Luke; Jennifer M Lynch; Jaume Mesquida; Rickson C Mesquita; Noman Naseer; Sergio L Novi; Felipe Orihuela-Espina; Thomas D O'Sullivan; Darcy S Peterka; Antonio Pifferi; Luca Pollonini; Angelo Sassaroli; João Ricardo Sato; Felix Scholkmann; Lorenzo Spinelli; Vivek J Srinivasan; Keith St Lawrence; Ilias Tachtsidis; Yunjie Tong; Alessandro Torricelli; Tara Urner; Heidrun Wabnitz; Martin Wolf; Ursula Wolf; Shiqi Xu; Changhuei Yang; Arjun G Yodh; Meryem A Yücel; Wenjun Zhou
Journal:  Neurophotonics       Date:  2022-08-30       Impact factor: 4.212

3.  Age-related changes in diffuse optical tomography sensitivity profiles from childhood to adulthood.

Authors:  Xiaoxue Fu; John E Richards
Journal:  J Biomed Opt       Date:  2022-07       Impact factor: 3.758

Review 4.  A Narrative Review on Clinical Applications of fNIRS.

Authors:  Md Asadur Rahman; Abu Bakar Siddik; Tarun Kanti Ghosh; Farzana Khanam; Mohiuddin Ahmad
Journal:  J Digit Imaging       Date:  2020-09-28       Impact factor: 4.056

Review 5.  Shedding light on pain for the clinic: a comprehensive review of using functional near-infrared spectroscopy to monitor its process in the brain.

Authors:  Xiao-Su Hu; Thiago D Nascimento; Alexandre F DaSilva
Journal:  Pain       Date:  2021-12-01       Impact factor: 6.961

6.  fNIRS Optodes' Location Decider (fOLD): a toolbox for probe arrangement guided by brain regions-of-interest.

Authors:  Guilherme Augusto Zimeo Morais; Joana Bisol Balardin; João Ricardo Sato
Journal:  Sci Rep       Date:  2018-02-20       Impact factor: 4.379

7.  Array Designer: automated optimized array design for functional near-infrared spectroscopy.

Authors:  Sabrina Brigadoi; Domenico Salvagnin; Matteo Fischetti; Robert J Cooper
Journal:  Neurophotonics       Date:  2018-09-13       Impact factor: 3.593

8.  Feature-Based Change Detection Reveals Inconsistent Individual Differences in Visual Working Memory Capacity.

Authors:  Joseph P Ambrose; Sobanawartiny Wijeakumar; Aaron T Buss; John P Spencer
Journal:  Front Syst Neurosci       Date:  2016-04-19

9.  fNIRS: An Emergent Method to Document Functional Cortical Activity during Infant Movements.

Authors:  Ryota Nishiyori
Journal:  Front Psychol       Date:  2016-04-20

Review 10.  Review of recent progress toward a fiberless, whole-scalp diffuse optical tomography system.

Authors:  Hubin Zhao; Robert J Cooper
Journal:  Neurophotonics       Date:  2017-09-26       Impact factor: 3.593

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