Literature DB >> 25705511

Crystal structure of cyclo-hexyl-ammonium thio-cyanate.

Abdulaziz A Bagabas1, Sultan B Alhoshan1, Hazem A Ghabbour2, C S Chidan Kumar3, Hoong-Kun Fun4.   

Abstract

In the title salt, C6H11NH3 (+)·SCN(-), the cyclo-hexyl-ammonium ring adopts a slightly distorted chair conformation. The ammonium group occupies an equatorial position to minimize 1,3 and 1,5 diaxial inter-actions. In the crystal, the components are linked by N-H⋯N and N-H⋯S hydrogen-bonding inter-actions, resulting in a three-dimensional network.

Entities:  

Keywords:  crystal structure; cyclo­hexyl­ammonium; distorted chair; hydrogen bonding

Year:  2015        PMID: 25705511      PMCID: PMC4331923          DOI: 10.1107/S2056989014027297

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the synthesis and uses of the title compound, see: Baluja et al. (1960 ▸); Coddens et al. (1986 ▸); Goel (1988 ▸); Mathes et al. (1948 ▸) 1955 ▸); Mathes & Stewart (1955 ▸); Morrison & Ratcliffe (1953 ▸); Stewart (1951 ▸); For the structures of other cyclo­hexyl­ammonium salts, see: Bagabas et al. (2014 ▸); Shimada et al. (1955 ▸); Smith et al. (1994 ▸); Odendal et al. (2010 ▸).

Experimental

Crystal data

C6H14N+·NCS− M = 158.26 Trigonal, a = 23.4036 (6) Å c = 8.3373 (2) Å V = 3954.8 (2) Å3 Z = 18 Cu Kα radiation μ = 2.71 mm−1 T = 296 K 0.98 × 0.25 × 0.11 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▸) T min = 0.176, T max = 0.748 10355 measured reflections 1670 independent reflections 1530 reflections with I > 2σ(I) R int = 0.051

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.100 S = 1.06 1670 reflections 103 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.22 e Å−3 Δρmin = −0.28 e Å−3

Data collection: APEX2 (Bruker, 2009 ▸); cell refinement: SAINT (Bruker, 2009 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▸); molecular graphics: SHELXTL (Sheldrick, 2008 ▸); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▸). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2056989014027297/sj5432sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989014027297/sj5432Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989014027297/sj5432Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989014027297/sj5432fig1.tif The molecular structure of the title compound with atom labels and 50% probability displacement ellipsoids. The strong N—H⋯N hydrogen bond linking the cation and the anion is shown as a dashed line. Click here for additional data file. . DOI: 10.1107/S2056989014027297/sj5432fig2.tif Crystal packing of the title compound, showing the N–H⋯N and N–H⋯S hydrogen bonding inter­actions (see Table 1) as dashed lines producing a three-dimensional network CCDC reference: 1039130 Additional supporting information: crystallographic information; 3D view; checkCIF report
C6H14N+·NCSDx = 1.196 Mg m3
Mr = 158.26Cu Kα radiation, λ = 1.54178 Å
Trigonal, R3:HCell parameters from 3689 reflections
a = 23.4036 (6) Åθ = 3.8–71.3°
c = 8.3373 (2) ŵ = 2.71 mm1
V = 3954.8 (2) Å3T = 296 K
Z = 18Needle, colourless
F(000) = 15480.98 × 0.25 × 0.11 mm
Bruker APEXII CCD diffractometer1530 reflections with I > 2σ(I)
φ and ω scansRint = 0.051
Absorption correction: multi-scan (SADABS; Bruker, 2009)θmax = 72.1°, θmin = 3.8°
Tmin = 0.176, Tmax = 0.748h = −28→28
10355 measured reflectionsk = −28→28
1670 independent reflectionsl = −7→9
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.038H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.100w = 1/[σ2(Fo2) + (0.0622P)2 + 1.6831P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
1670 reflectionsΔρmax = 0.22 e Å3
103 parametersΔρmin = −0.28 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
S10.06708 (2)0.40416 (2)0.39763 (4)0.04932 (18)
N10.22496 (6)0.30544 (6)0.62467 (16)0.0396 (3)
N20.15453 (8)0.36894 (8)0.5327 (2)0.0628 (4)
C10.17544 (6)0.24495 (6)0.71255 (15)0.0339 (3)
H1A0.15410.25820.79390.041*
C20.12316 (7)0.19773 (7)0.59728 (17)0.0433 (3)
H2A0.14370.18620.51190.052*
H2B0.10050.21870.54960.052*
C30.07361 (7)0.13543 (8)0.6863 (2)0.0525 (4)
H3A0.04940.14650.76260.063*
H3B0.04220.10410.61020.063*
C40.10721 (9)0.10360 (7)0.7747 (2)0.0570 (4)
H4A0.12640.08710.69730.068*
H4B0.07460.06640.83640.068*
C50.16092 (8)0.15210 (8)0.88648 (19)0.0502 (4)
H5A0.18360.13120.93450.060*
H5B0.14100.16430.97210.060*
C60.21055 (7)0.21389 (7)0.79664 (18)0.0422 (3)
H6A0.24270.24520.87150.051*
H6B0.23390.20250.71840.051*
C70.11856 (7)0.38340 (7)0.47760 (17)0.0426 (3)
H3N0.2412 (9)0.2942 (10)0.545 (2)0.055 (5)*
H2N0.2062 (9)0.3280 (9)0.587 (2)0.046 (4)*
H1N0.2572 (10)0.3321 (10)0.691 (3)0.061 (5)*
U11U22U33U12U13U23
S10.0485 (2)0.0679 (3)0.0414 (3)0.03650 (19)0.00383 (14)0.00618 (15)
N10.0367 (6)0.0371 (6)0.0419 (7)0.0162 (5)−0.0010 (5)0.0025 (5)
N20.0598 (8)0.0673 (9)0.0734 (10)0.0408 (8)−0.0064 (7)0.0012 (7)
C10.0320 (6)0.0350 (6)0.0344 (7)0.0165 (5)0.0010 (5)0.0007 (5)
C20.0362 (7)0.0460 (7)0.0398 (8)0.0145 (6)−0.0040 (5)−0.0015 (6)
C30.0374 (7)0.0488 (8)0.0518 (9)0.0070 (6)0.0015 (6)−0.0043 (7)
C40.0615 (9)0.0362 (7)0.0624 (10)0.0162 (7)0.0150 (8)0.0050 (7)
C50.0567 (9)0.0488 (8)0.0500 (9)0.0299 (7)0.0048 (7)0.0119 (6)
C60.0379 (7)0.0437 (7)0.0469 (8)0.0218 (6)−0.0034 (6)0.0032 (6)
C70.0416 (7)0.0437 (7)0.0417 (8)0.0207 (6)0.0031 (6)−0.0006 (6)
S1—C71.6486 (15)C3—C41.517 (3)
N1—C11.4978 (16)C3—H3A0.9700
N1—H3N0.87 (2)C3—H3B0.9700
N1—H2N0.90 (2)C4—C51.520 (2)
N1—H1N0.89 (2)C4—H4A0.9700
N2—C71.148 (2)C4—H4B0.9700
C1—C21.5132 (18)C5—C61.524 (2)
C1—C61.5142 (18)C5—H5A0.9700
C1—H1A0.9800C5—H5B0.9700
C2—C31.527 (2)C6—H6A0.9700
C2—H2A0.9700C6—H6B0.9700
C2—H2B0.9700
C1—N1—H3N109.8 (13)C2—C3—H3B109.2
C1—N1—H2N110.7 (11)H3A—C3—H3B107.9
H3N—N1—H2N108.9 (17)C3—C4—C5111.65 (13)
C1—N1—H1N109.9 (13)C3—C4—H4A109.3
H3N—N1—H1N110.1 (18)C5—C4—H4A109.3
H2N—N1—H1N107.5 (16)C3—C4—H4B109.3
N1—C1—C2109.91 (11)C5—C4—H4B109.3
N1—C1—C6109.33 (11)H4A—C4—H4B108.0
C2—C1—C6112.22 (11)C4—C5—C6111.14 (13)
N1—C1—H1A108.4C4—C5—H5A109.4
C2—C1—H1A108.4C6—C5—H5A109.4
C6—C1—H1A108.4C4—C5—H5B109.4
C1—C2—C3109.83 (11)C6—C5—H5B109.4
C1—C2—H2A109.7H5A—C5—H5B108.0
C3—C2—H2A109.7C1—C6—C5110.12 (11)
C1—C2—H2B109.7C1—C6—H6A109.6
C3—C2—H2B109.7C5—C6—H6A109.6
H2A—C2—H2B108.2C1—C6—H6B109.6
C4—C3—C2111.86 (13)C5—C6—H6B109.6
C4—C3—H3A109.2H6A—C6—H6B108.2
C2—C3—H3A109.2N2—C7—S1179.71 (16)
C4—C3—H3B109.2
N1—C1—C2—C3178.72 (12)C3—C4—C5—C6−54.67 (18)
C6—C1—C2—C356.83 (16)N1—C1—C6—C5−179.85 (12)
C1—C2—C3—C4−54.73 (17)C2—C1—C6—C5−57.63 (16)
C2—C3—C4—C554.43 (18)C4—C5—C6—C155.66 (17)
D—H···AD—HH···AD···AD—H···A
N1—H1N···S1i0.89 (2)2.62 (2)3.4955 (14)167 (2)
N1—H2N···N20.90 (2)1.94 (2)2.822 (2)170.4 (18)
N1—H3N···S1ii0.87 (2)2.573 (18)3.4214 (14)165.5 (19)
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
N1H1NS1i 0.89(2)2.62(2)3.4955(14)167(2)
N1H2NN20.90(2)1.94(2)2.822(2)170.4(18)
N1H3NS1ii 0.87(2)2.573(18)3.4214(14)165.5(19)

Symmetry codes: (i) ; (ii) .

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