Literature DB >> 25705510

Crystal structure of 1-(2,4-di-methyl-phen-yl)urea.

L Jayalakshmi1, C Ramalingan1, B Sridhar2, S Selvanayagam3.   

Abstract

In the title urea derivative, C9H12N2O, the dihedral angle between the benzene ring and the mean plane of the urea group, N-C(=O)-N, is 86.6 (1)°. In the crystal, the urea O atom is involved in three N-H⋯O hydrogen bonds. Mol-ecules are linked via pairs of N-H⋯O hydrogen bonds, forming inversion dimers with an R (2) 2(8) ring motif. The dimers are linked by further N-H⋯O hydrogen bonds, forming two-dimensional networks lying parallel to (100).

Entities:  

Keywords:  crystal structure; hydrogen bonding; urea; urea derivatives

Year:  2015        PMID: 25705510      PMCID: PMC4331890          DOI: 10.1107/S2056989014027431

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For general background to urea derivatives and their biological applications and properties, see: Ramalingan & Kwak (2008 ▸); Ramalingan et al. (2010 ▸); Yang et al. (2013 ▸); Safari & Gandomi-Ravandi (2014 ▸); Suzuki et al. (2013 ▸); Boulahjar et al. (2012 ▸); Zhang et al. (2014 ▸)

Experimental

Crystal data

C9H12N2O M = 164.21 Monoclinic, a = 14.631 (4) Å b = 7.0633 (19) Å c = 8.786 (2) Å β = 93.530 (4)° V = 906.2 (4) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 292 K 0.20 × 0.18 × 0.16 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer 8026 measured reflections 1556 independent reflections 1284 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.100 wR(F 2) = 0.349 S = 1.59 1556 reflections 119 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.87 e Å−3 Δρmin = −0.32 e Å−3

Data collection: SMART (Bruker, 2001 ▸); cell refinement: SAINT (Bruker, 2001 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸) and PLATON (Spek, 2009 ▸); software used to prepare material for publication: SHELXL2013 and PLATON (Spek, 2009 ▸). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2056989014027431/su5043sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989014027431/su5043Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989014027431/su5043Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989014027431/su5043fig1.tif The mol­ecular structure of the title compound, with atom labelling. Displacement ellipsoids are drawn at the 30% probability level. Click here for additional data file. a . DOI: 10.1107/S2056989014027431/su5043fig2.tif A projection of the crystal packing of the title compound, along the a axis. Hydrogen bonds are shown as dashed lines (see Table 1 for details; H atoms not involved in hydrogen bonding have been omitted for clarity). CCDC reference: 1039538 Additional supporting information: crystallographic information; 3D view; checkCIF report
C9H12N2OF(000) = 352
Mr = 164.21Dx = 1.204 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 14.631 (4) ÅCell parameters from 6568 reflections
b = 7.0633 (19) Åθ = 2.8–24.6°
c = 8.786 (2) ŵ = 0.08 mm1
β = 93.530 (4)°T = 292 K
V = 906.2 (4) Å3Block, colourless
Z = 40.20 × 0.18 × 0.16 mm
Bruker SMART APEX CCD area-detector diffractometerRint = 0.028
Radiation source: fine-focus sealed tubeθmax = 25.0°, θmin = 2.8°
ω scansh = −17→17
8026 measured reflectionsk = −8→8
1556 independent reflectionsl = −10→10
1284 reflections with I > 2σ(I)
Refinement on F22 restraints
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.100H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.349w = 1/[σ2(Fo2) + (0.2P)2] where P = (Fo2 + 2Fc2)/3
S = 1.59(Δ/σ)max = 0.001
1556 reflectionsΔρmax = 0.87 e Å3
119 parametersΔρmin = −0.32 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
O10.40043 (14)0.1453 (3)0.55423 (18)0.0634 (8)
N10.32526 (19)0.2851 (4)0.3520 (3)0.0709 (10)
H10.31860.29270.25430.085*
N20.4476 (2)0.0982 (4)0.3174 (3)0.0682 (9)
H2A0.437 (2)0.125 (4)0.2228 (15)0.060 (8)*
H2B0.4934 (19)0.036 (5)0.360 (4)0.089 (11)*
C10.1253 (4)0.4077 (12)0.5679 (5)0.1144 (17)
H1A0.07000.35300.59120.137*
C20.1467 (3)0.5877 (12)0.6154 (4)0.122 (2)
C30.2259 (4)0.6656 (8)0.5753 (5)0.1049 (17)
H30.24040.78760.60850.126*
C40.2873 (2)0.5700 (6)0.4854 (4)0.0794 (11)
C50.2652 (2)0.3904 (5)0.4421 (3)0.0666 (10)
C60.1852 (3)0.3106 (8)0.4870 (4)0.0921 (13)
H60.17210.18550.46060.111*
C70.0822 (4)0.7033 (13)0.7118 (7)0.178 (4)
H7A0.08060.64770.81140.267*
H7B0.02160.70300.66300.267*
H7C0.10400.83120.72120.267*
C80.3708 (4)0.6517 (7)0.4485 (7)0.1135 (16)
H8A0.39420.58530.36380.170*
H8B0.41420.64330.53480.170*
H8C0.36120.78220.42170.170*
C90.39175 (19)0.1749 (4)0.4154 (3)0.0519 (8)
U11U22U33U12U13U23
O10.0806 (14)0.0787 (15)0.0316 (11)0.0198 (9)0.0094 (9)0.0014 (7)
N10.0824 (18)0.0971 (19)0.0338 (12)0.0270 (14)0.0098 (11)0.0074 (11)
N20.0857 (18)0.0849 (18)0.0353 (14)0.0251 (13)0.0137 (11)0.0013 (10)
C10.090 (3)0.193 (5)0.063 (2)0.031 (3)0.025 (2)0.007 (3)
C20.068 (2)0.245 (7)0.053 (2)0.063 (3)0.0003 (17)−0.015 (3)
C30.104 (3)0.123 (3)0.084 (3)0.036 (3)−0.019 (3)−0.036 (2)
C40.0685 (19)0.105 (3)0.064 (2)0.0184 (17)−0.0010 (15)−0.0088 (16)
C50.0682 (19)0.090 (2)0.0417 (16)0.0245 (15)0.0069 (13)0.0057 (13)
C60.086 (2)0.128 (3)0.064 (2)0.018 (2)0.0218 (17)0.0214 (19)
C70.106 (4)0.316 (9)0.112 (4)0.091 (5)−0.002 (3)−0.091 (5)
C80.112 (3)0.101 (3)0.129 (4)−0.017 (3)0.024 (3)0.004 (3)
C90.0652 (16)0.0572 (15)0.0342 (14)0.0069 (11)0.0094 (11)−0.0013 (9)
O1—C91.236 (3)C3—C41.406 (6)
N1—C91.340 (4)C3—H30.9300
N1—C51.428 (4)C4—C51.358 (6)
N1—H10.8600C4—C81.407 (7)
N2—C91.337 (4)C5—C61.377 (6)
N2—H2A0.857 (10)C6—H60.9300
N2—H2B0.863 (10)C7—H7A0.9600
C1—C61.351 (7)C7—H7B0.9600
C1—C21.368 (10)C7—H7C0.9600
C1—H1A0.9300C8—H8A0.9600
C2—C31.348 (9)C8—H8B0.9600
C2—C71.541 (6)C8—H8C0.9600
C9—N1—C5121.9 (2)C6—C5—N1120.5 (4)
C9—N1—H1119.1C1—C6—C5122.2 (6)
C5—N1—H1119.1C1—C6—H6118.9
C9—N2—H2A117 (2)C5—C6—H6118.9
C9—N2—H2B115 (3)C2—C7—H7A109.5
H2A—N2—H2B128 (4)C2—C7—H7B109.5
C6—C1—C2119.2 (6)H7A—C7—H7B109.5
C6—C1—H1A120.4C2—C7—H7C109.5
C2—C1—H1A120.4H7A—C7—H7C109.5
C3—C2—C1119.0 (4)H7B—C7—H7C109.5
C3—C2—C7119.5 (7)C4—C8—H8A109.5
C1—C2—C7121.5 (6)C4—C8—H8B109.5
C2—C3—C4122.7 (5)H8A—C8—H8B109.5
C2—C3—H3118.7C4—C8—H8C109.5
C4—C3—H3118.7H8A—C8—H8C109.5
C5—C4—C3117.1 (4)H8B—C8—H8C109.5
C5—C4—C8121.0 (4)O1—C9—N2122.5 (2)
C3—C4—C8121.8 (4)O1—C9—N1122.4 (2)
C4—C5—C6119.7 (3)N2—C9—N1115.1 (2)
C4—C5—N1119.8 (3)
C6—C1—C2—C32.3 (7)C8—C4—C5—N1−2.8 (5)
C6—C1—C2—C7−178.3 (4)C9—N1—C5—C490.7 (4)
C1—C2—C3—C40.5 (7)C9—N1—C5—C6−88.6 (4)
C7—C2—C3—C4−178.9 (4)C2—C1—C6—C5−4.1 (7)
C2—C3—C4—C5−1.6 (6)C4—C5—C6—C12.9 (6)
C2—C3—C4—C8−178.1 (5)N1—C5—C6—C1−177.8 (3)
C3—C4—C5—C6−0.1 (5)C5—N1—C9—O16.1 (5)
C8—C4—C5—C6176.5 (4)C5—N1—C9—N2−174.4 (3)
C3—C4—C5—N1−179.4 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.862.232.941 (3)140
N2—H2A···O1i0.86 (1)2.24 (2)2.985 (3)145 (3)
N2—H2B···O1ii0.86 (1)2.12 (1)2.977 (3)173 (4)
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
N1H1O1i 0.862.232.941(3)140
N2H2AO1i 0.86(1)2.24(2)2.985(3)145(3)
N2H2BO1ii 0.86(1)2.12(1)2.977(3)173(4)

Symmetry codes: (i) ; (ii) .

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