| Literature DB >> 25705510 |
L Jayalakshmi1, C Ramalingan1, B Sridhar2, S Selvanayagam3.
Abstract
In the title urea derivative, C9H12N2O, the dihedral angle between the benzene ring and the mean plane of the urea group, N-C(=O)-N, is 86.6 (1)°. In the crystal, the urea O atom is involved in three N-H⋯O hydrogen bonds. Mol-ecules are linked via pairs of N-H⋯O hydrogen bonds, forming inversion dimers with an R (2) 2(8) ring motif. The dimers are linked by further N-H⋯O hydrogen bonds, forming two-dimensional networks lying parallel to (100).Entities:
Keywords: crystal structure; hydrogen bonding; urea; urea derivatives
Year: 2015 PMID: 25705510 PMCID: PMC4331890 DOI: 10.1107/S2056989014027431
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
| C9H12N2O | |
| Monoclinic, | Mo |
| Cell parameters from 6568 reflections | |
| θ = 2.8–24.6° | |
| µ = 0.08 mm−1 | |
| β = 93.530 (4)° | |
| Block, colourless | |
| 0.20 × 0.18 × 0.16 mm |
| Bruker SMART APEX CCD area-detector diffractometer | |
| Radiation source: fine-focus sealed tube | θmax = 25.0°, θmin = 2.8° |
| ω scans | |
| 8026 measured reflections | |
| 1556 independent reflections | |
| 1284 reflections with |
| Refinement on | 2 restraints |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.001 | |
| 1556 reflections | Δρmax = 0.87 e Å−3 |
| 119 parameters | Δρmin = −0.32 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| O1 | 0.40043 (14) | 0.1453 (3) | 0.55423 (18) | 0.0634 (8) | |
| N1 | 0.32526 (19) | 0.2851 (4) | 0.3520 (3) | 0.0709 (10) | |
| H1 | 0.3186 | 0.2927 | 0.2543 | 0.085* | |
| N2 | 0.4476 (2) | 0.0982 (4) | 0.3174 (3) | 0.0682 (9) | |
| H2A | 0.437 (2) | 0.125 (4) | 0.2228 (15) | 0.060 (8)* | |
| H2B | 0.4934 (19) | 0.036 (5) | 0.360 (4) | 0.089 (11)* | |
| C1 | 0.1253 (4) | 0.4077 (12) | 0.5679 (5) | 0.1144 (17) | |
| H1A | 0.0700 | 0.3530 | 0.5912 | 0.137* | |
| C2 | 0.1467 (3) | 0.5877 (12) | 0.6154 (4) | 0.122 (2) | |
| C3 | 0.2259 (4) | 0.6656 (8) | 0.5753 (5) | 0.1049 (17) | |
| H3 | 0.2404 | 0.7876 | 0.6085 | 0.126* | |
| C4 | 0.2873 (2) | 0.5700 (6) | 0.4854 (4) | 0.0794 (11) | |
| C5 | 0.2652 (2) | 0.3904 (5) | 0.4421 (3) | 0.0666 (10) | |
| C6 | 0.1852 (3) | 0.3106 (8) | 0.4870 (4) | 0.0921 (13) | |
| H6 | 0.1721 | 0.1855 | 0.4606 | 0.111* | |
| C7 | 0.0822 (4) | 0.7033 (13) | 0.7118 (7) | 0.178 (4) | |
| H7A | 0.0806 | 0.6477 | 0.8114 | 0.267* | |
| H7B | 0.0216 | 0.7030 | 0.6630 | 0.267* | |
| H7C | 0.1040 | 0.8312 | 0.7212 | 0.267* | |
| C8 | 0.3708 (4) | 0.6517 (7) | 0.4485 (7) | 0.1135 (16) | |
| H8A | 0.3942 | 0.5853 | 0.3638 | 0.170* | |
| H8B | 0.4142 | 0.6433 | 0.5348 | 0.170* | |
| H8C | 0.3612 | 0.7822 | 0.4217 | 0.170* | |
| C9 | 0.39175 (19) | 0.1749 (4) | 0.4154 (3) | 0.0519 (8) |
| O1 | 0.0806 (14) | 0.0787 (15) | 0.0316 (11) | 0.0198 (9) | 0.0094 (9) | 0.0014 (7) |
| N1 | 0.0824 (18) | 0.0971 (19) | 0.0338 (12) | 0.0270 (14) | 0.0098 (11) | 0.0074 (11) |
| N2 | 0.0857 (18) | 0.0849 (18) | 0.0353 (14) | 0.0251 (13) | 0.0137 (11) | 0.0013 (10) |
| C1 | 0.090 (3) | 0.193 (5) | 0.063 (2) | 0.031 (3) | 0.025 (2) | 0.007 (3) |
| C2 | 0.068 (2) | 0.245 (7) | 0.053 (2) | 0.063 (3) | 0.0003 (17) | −0.015 (3) |
| C3 | 0.104 (3) | 0.123 (3) | 0.084 (3) | 0.036 (3) | −0.019 (3) | −0.036 (2) |
| C4 | 0.0685 (19) | 0.105 (3) | 0.064 (2) | 0.0184 (17) | −0.0010 (15) | −0.0088 (16) |
| C5 | 0.0682 (19) | 0.090 (2) | 0.0417 (16) | 0.0245 (15) | 0.0069 (13) | 0.0057 (13) |
| C6 | 0.086 (2) | 0.128 (3) | 0.064 (2) | 0.018 (2) | 0.0218 (17) | 0.0214 (19) |
| C7 | 0.106 (4) | 0.316 (9) | 0.112 (4) | 0.091 (5) | −0.002 (3) | −0.091 (5) |
| C8 | 0.112 (3) | 0.101 (3) | 0.129 (4) | −0.017 (3) | 0.024 (3) | 0.004 (3) |
| C9 | 0.0652 (16) | 0.0572 (15) | 0.0342 (14) | 0.0069 (11) | 0.0094 (11) | −0.0013 (9) |
| O1—C9 | 1.236 (3) | C3—C4 | 1.406 (6) |
| N1—C9 | 1.340 (4) | C3—H3 | 0.9300 |
| N1—C5 | 1.428 (4) | C4—C5 | 1.358 (6) |
| N1—H1 | 0.8600 | C4—C8 | 1.407 (7) |
| N2—C9 | 1.337 (4) | C5—C6 | 1.377 (6) |
| N2—H2A | 0.857 (10) | C6—H6 | 0.9300 |
| N2—H2B | 0.863 (10) | C7—H7A | 0.9600 |
| C1—C6 | 1.351 (7) | C7—H7B | 0.9600 |
| C1—C2 | 1.368 (10) | C7—H7C | 0.9600 |
| C1—H1A | 0.9300 | C8—H8A | 0.9600 |
| C2—C3 | 1.348 (9) | C8—H8B | 0.9600 |
| C2—C7 | 1.541 (6) | C8—H8C | 0.9600 |
| C9—N1—C5 | 121.9 (2) | C6—C5—N1 | 120.5 (4) |
| C9—N1—H1 | 119.1 | C1—C6—C5 | 122.2 (6) |
| C5—N1—H1 | 119.1 | C1—C6—H6 | 118.9 |
| C9—N2—H2A | 117 (2) | C5—C6—H6 | 118.9 |
| C9—N2—H2B | 115 (3) | C2—C7—H7A | 109.5 |
| H2A—N2—H2B | 128 (4) | C2—C7—H7B | 109.5 |
| C6—C1—C2 | 119.2 (6) | H7A—C7—H7B | 109.5 |
| C6—C1—H1A | 120.4 | C2—C7—H7C | 109.5 |
| C2—C1—H1A | 120.4 | H7A—C7—H7C | 109.5 |
| C3—C2—C1 | 119.0 (4) | H7B—C7—H7C | 109.5 |
| C3—C2—C7 | 119.5 (7) | C4—C8—H8A | 109.5 |
| C1—C2—C7 | 121.5 (6) | C4—C8—H8B | 109.5 |
| C2—C3—C4 | 122.7 (5) | H8A—C8—H8B | 109.5 |
| C2—C3—H3 | 118.7 | C4—C8—H8C | 109.5 |
| C4—C3—H3 | 118.7 | H8A—C8—H8C | 109.5 |
| C5—C4—C3 | 117.1 (4) | H8B—C8—H8C | 109.5 |
| C5—C4—C8 | 121.0 (4) | O1—C9—N2 | 122.5 (2) |
| C3—C4—C8 | 121.8 (4) | O1—C9—N1 | 122.4 (2) |
| C4—C5—C6 | 119.7 (3) | N2—C9—N1 | 115.1 (2) |
| C4—C5—N1 | 119.8 (3) | ||
| C6—C1—C2—C3 | 2.3 (7) | C8—C4—C5—N1 | −2.8 (5) |
| C6—C1—C2—C7 | −178.3 (4) | C9—N1—C5—C4 | 90.7 (4) |
| C1—C2—C3—C4 | 0.5 (7) | C9—N1—C5—C6 | −88.6 (4) |
| C7—C2—C3—C4 | −178.9 (4) | C2—C1—C6—C5 | −4.1 (7) |
| C2—C3—C4—C5 | −1.6 (6) | C4—C5—C6—C1 | 2.9 (6) |
| C2—C3—C4—C8 | −178.1 (5) | N1—C5—C6—C1 | −177.8 (3) |
| C3—C4—C5—C6 | −0.1 (5) | C5—N1—C9—O1 | 6.1 (5) |
| C8—C4—C5—C6 | 176.5 (4) | C5—N1—C9—N2 | −174.4 (3) |
| C3—C4—C5—N1 | −179.4 (3) |
| H··· | ||||
| N1—H1···O1i | 0.86 | 2.23 | 2.941 (3) | 140 |
| N2—H2 | 0.86 (1) | 2.24 (2) | 2.985 (3) | 145 (3) |
| N2—H2 | 0.86 (1) | 2.12 (1) | 2.977 (3) | 173 (4) |
Hydrogen-bond geometry (, )
|
|
| H |
|
|
|---|---|---|---|---|
| N1H1O1i | 0.86 | 2.23 | 2.941(3) | 140 |
| N2H2 | 0.86(1) | 2.24(2) | 2.985(3) | 145(3) |
| N2H2 | 0.86(1) | 2.12(1) | 2.977(3) | 173(4) |
Symmetry codes: (i) ; (ii) .