Literature DB >> 25705509

Crystal structure of 2-(1,3-dioxoindan-2-yl)iso-quinoline-1,3,4-trione.

Raza Murad Ghalib1, C S Chidan Kumar2, Rokiah Hashim3, Othman Sulaiman3, Hoong-Kun Fun4.   

Abstract

In the title iso-quinoline-1,3,4-trione derivative, C18H9NO5, the five-membered ring of the indane fragment adopts an envelope conformation with the nitro-gen-substituted C atom being the flap. The planes of the indane benzene ring and the iso-quinoline-1,3,4-trione ring make a dihedral angle of 82.06 (6)°. In the crystal, mol-ecules are linked into chains extending along the bc plane via C-H⋯O hydrogen-bonding inter-actions, enclosing R 2 (2)(8) and R 2 (2)(10) loops. The chains are further connected by π-π stacking inter-ations, with centroid-to-centroid distances of 3.9050 (7) Å, forming layers parallel to the b axis.

Entities:  

Keywords:  crystal structure; hydrogen bonding; iso­quinoline-1,3,4-trione derivative; pharmacological properties; synthesis

Year:  2015        PMID: 25705509      PMCID: PMC4331915          DOI: 10.1107/S2056989014025997

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the biological activity of iso­quinoline-1,3,4-triones, see: Chen et al. (2006 ▸); Du et al. (2008 ▸). For related iso­quinoline-1,3,4-trione structures, see: Yu et al. (2010 ▸); Huang et al. (2013 ▸). For synthetic applications of iso­quinoline-1,3,4-trione, see: Yu et al. (2010 ▸); Huang et al. (2011 ▸, 2013 ▸). For the synthesis of related compounds, see: Chen et al. (2006 ▸); Du et al. (2008 ▸); Ghalib et al. 2011 ▸; Schaber et al. 2004 ▸; Huang et al. (2013 ▸).

Experimental

Crystal data

C18H9NO5 M = 319.26 Monoclinic, a = 12.6080 (1) Å b = 13.6849 (2) Å c = 8.4467 (1) Å β = 102.051 (1)° V = 1425.27 (3) Å3 Z = 4 Cu Kα radiation μ = 0.93 mm−1 T = 100 K 0.24 × 0.15 × 0.14 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▸) T min = 0.808, T max = 0.879 9639 measured reflections 2597 independent reflections 2458 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.093 S = 1.04 2597 reflections 217 parameters H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.20 e Å−3

Data collection: APEX2 (Bruker, 2009 ▸); cell refinement: SAINT (Bruker, 2009 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▸); molecular graphics: SHELXTL (Sheldrick, 2008 ▸); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▸). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S2056989014025997/zl2607sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989014025997/zl2607Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989014025997/zl2607Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989014025997/zl2607fig1.tif The mol­ecular structure of the title compound with atom labels and 50% probability displacement ellipsoids. Click here for additional data file. A A x y z . DOI: 10.1107/S2056989014025997/zl2607fig2.tif Crystal packing of the title compound, showing the C6–H6A⋯O2 and C7–H7A⋯O1 hydrogen bonding inter­actions (Symmetry codes: x, y, z + 1) as dashed lines incorporating (8) loops. Other H-atoms are omited for clarity. Click here for additional data file. x y z x y z x y z . DOI: 10.1107/S2056989014025997/zl2607fig3.tif Crystal packing of the title compound, showing the C–H⋯O hydrogen bonding inter­actions (Symmetry codes: x, −y + , z − ; −x, y + , −z − ; −x, y − , −z − ) as dashed lines incorporating (10) loops. Other H-atoms are omited for clarity. Click here for additional data file. . DOI: 10.1107/S2056989014025997/zl2607fig4.tif Reaction scheme for the title compound. CCDC reference: 1036387 Additional supporting information: crystallographic information; 3D view; checkCIF report
C18H9NO5F(000) = 656
Mr = 319.26Dx = 1.488 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54178 Å
a = 12.6080 (1) ÅCell parameters from 6347 reflections
b = 13.6849 (2) Åθ = 6.3–71.7°
c = 8.4467 (1) ŵ = 0.93 mm1
β = 102.051 (1)°T = 100 K
V = 1425.27 (3) Å3Block, orange
Z = 40.24 × 0.15 × 0.14 mm
Bruker APEXII CCD diffractometer2458 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.024
φ and ω scansθmax = 72.0°, θmin = 6.3°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −15→14
Tmin = 0.808, Tmax = 0.879k = −16→16
9639 measured reflectionsl = −9→8
2597 independent reflections
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.035H-atom parameters constrained
wR(F2) = 0.093w = 1/[σ2(Fo2) + (0.0504P)2 + 0.5485P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
2597 reflectionsΔρmax = 0.27 e Å3
217 parametersΔρmin = −0.20 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
O10.36681 (7)0.34686 (7)−0.36897 (11)0.0226 (2)
O20.56844 (7)0.37737 (7)−0.18918 (11)0.0244 (2)
O30.22076 (7)0.37449 (6)0.07501 (11)0.0212 (2)
O40.14773 (7)0.52030 (7)−0.25876 (13)0.0310 (3)
O50.14677 (7)0.18880 (6)−0.12358 (10)0.0208 (2)
N10.29330 (8)0.35524 (7)−0.14517 (12)0.0167 (2)
C10.37928 (9)0.35678 (8)−0.22453 (15)0.0171 (3)
C20.49378 (10)0.37240 (8)−0.11979 (15)0.0182 (3)
C30.50578 (10)0.38012 (8)0.05673 (15)0.0173 (3)
C40.60836 (10)0.39054 (9)0.15659 (16)0.0202 (3)
H4A0.67100.39330.11080.024*
C50.61838 (10)0.39680 (9)0.32253 (16)0.0219 (3)
H5A0.68800.40430.39070.026*
C60.52631 (10)0.39207 (9)0.39026 (16)0.0213 (3)
H6A0.53390.39470.50450.026*
C70.42389 (10)0.38360 (8)0.29149 (15)0.0191 (3)
H7A0.36140.38170.33770.023*
C80.41329 (10)0.37786 (8)0.12429 (15)0.0172 (3)
C90.30286 (10)0.36955 (8)0.02176 (15)0.0172 (3)
C100.18389 (9)0.34521 (9)−0.24087 (15)0.0180 (3)
H10A0.18940.3278−0.35390.022*
C110.11456 (10)0.43817 (9)−0.24898 (16)0.0210 (3)
C120.00327 (10)0.40620 (9)−0.24322 (16)0.0215 (3)
C13−0.09105 (10)0.46146 (10)−0.26425 (18)0.0276 (3)
H13A−0.09100.5291−0.28930.033*
C14−0.18531 (11)0.41422 (10)−0.2473 (2)0.0314 (3)
H14A−0.25100.4502−0.26100.038*
C15−0.18544 (11)0.31468 (10)−0.21033 (19)0.0315 (3)
H15A−0.25130.2842−0.20000.038*
C16−0.09097 (11)0.25943 (10)−0.18845 (18)0.0267 (3)
H16A−0.09100.1918−0.16290.032*
C170.00336 (10)0.30685 (9)−0.20540 (15)0.0201 (3)
C180.11462 (9)0.26700 (8)−0.18079 (14)0.0173 (3)
U11U22U33U12U13U23
O10.0203 (4)0.0298 (5)0.0183 (5)−0.0022 (3)0.0056 (3)−0.0011 (4)
O20.0176 (4)0.0350 (5)0.0221 (5)−0.0004 (3)0.0075 (4)0.0005 (4)
O30.0169 (4)0.0267 (5)0.0214 (5)−0.0016 (3)0.0072 (3)−0.0031 (3)
O40.0215 (5)0.0205 (5)0.0501 (7)−0.0025 (4)0.0055 (4)0.0081 (4)
O50.0218 (4)0.0175 (4)0.0219 (5)0.0011 (3)0.0019 (3)−0.0010 (3)
N10.0137 (5)0.0192 (5)0.0172 (5)−0.0005 (4)0.0031 (4)−0.0007 (4)
C10.0180 (6)0.0152 (6)0.0189 (7)0.0001 (4)0.0055 (5)0.0008 (4)
C20.0169 (6)0.0160 (6)0.0222 (7)0.0003 (4)0.0055 (5)0.0006 (5)
C30.0180 (6)0.0149 (5)0.0190 (6)0.0000 (4)0.0043 (5)0.0012 (4)
C40.0180 (6)0.0196 (6)0.0234 (7)−0.0004 (4)0.0054 (5)0.0014 (5)
C50.0185 (6)0.0224 (6)0.0226 (7)−0.0017 (5)−0.0004 (5)0.0007 (5)
C60.0250 (6)0.0207 (6)0.0180 (6)−0.0017 (5)0.0036 (5)−0.0004 (5)
C70.0206 (6)0.0178 (6)0.0202 (6)−0.0010 (4)0.0069 (5)−0.0003 (4)
C80.0181 (6)0.0138 (5)0.0198 (6)−0.0005 (4)0.0039 (5)0.0002 (4)
C90.0180 (6)0.0146 (5)0.0198 (6)−0.0006 (4)0.0060 (5)−0.0006 (4)
C100.0157 (6)0.0203 (6)0.0174 (6)−0.0002 (4)0.0024 (4)0.0001 (4)
C110.0177 (6)0.0207 (6)0.0237 (7)−0.0003 (5)0.0022 (5)0.0039 (5)
C120.0178 (6)0.0202 (6)0.0257 (7)−0.0012 (5)0.0031 (5)0.0000 (5)
C130.0203 (6)0.0192 (6)0.0423 (8)0.0017 (5)0.0042 (5)0.0014 (6)
C140.0177 (6)0.0261 (7)0.0497 (9)0.0029 (5)0.0058 (6)−0.0034 (6)
C150.0188 (6)0.0264 (7)0.0508 (9)−0.0049 (5)0.0107 (6)−0.0036 (6)
C160.0222 (6)0.0189 (6)0.0398 (8)−0.0028 (5)0.0083 (5)−0.0010 (5)
C170.0183 (6)0.0195 (6)0.0225 (7)−0.0007 (5)0.0039 (5)−0.0019 (5)
C180.0177 (6)0.0180 (6)0.0157 (6)−0.0019 (4)0.0025 (4)−0.0035 (4)
O1—C11.2048 (15)C7—C81.3927 (18)
O2—C21.2102 (15)C7—H7A0.9500
O3—C91.2136 (15)C8—C91.4825 (17)
O4—C111.2080 (16)C10—C181.5332 (16)
O5—C181.2088 (15)C10—C111.5370 (16)
N1—C11.3886 (15)C10—H10A1.0000
N1—C91.4036 (16)C11—C121.4802 (17)
N1—C101.4525 (15)C12—C131.3890 (18)
C1—C21.5424 (16)C12—C171.3966 (17)
C2—C31.4707 (17)C13—C141.3863 (19)
C3—C41.3961 (17)C13—H13A0.9500
C3—C81.4016 (17)C14—C151.398 (2)
C4—C51.3835 (18)C14—H14A0.9500
C4—H4A0.9500C15—C161.3901 (19)
C5—C61.3987 (18)C15—H15A0.9500
C5—H5A0.9500C16—C171.3883 (18)
C6—C71.3881 (18)C16—H16A0.9500
C6—H6A0.9500C17—C181.4787 (16)
C1—N1—C9124.81 (10)N1—C10—C18114.97 (10)
C1—N1—C10118.64 (10)N1—C10—C11114.32 (10)
C9—N1—C10116.40 (10)C18—C10—C11103.57 (9)
O1—C1—N1122.48 (11)N1—C10—H10A107.9
O1—C1—C2120.34 (11)C18—C10—H10A107.9
N1—C1—C2117.17 (10)C11—C10—H10A107.9
O2—C2—C3124.14 (11)O4—C11—C12128.41 (12)
O2—C2—C1117.35 (11)O4—C11—C10124.84 (11)
C3—C2—C1118.51 (10)C12—C11—C10106.74 (10)
C4—C3—C8120.06 (11)C13—C12—C17121.27 (12)
C4—C3—C2120.40 (11)C13—C12—C11128.83 (12)
C8—C3—C2119.54 (11)C17—C12—C11109.86 (11)
C5—C4—C3119.71 (11)C14—C13—C12117.55 (12)
C5—C4—H4A120.1C14—C13—H13A121.2
C3—C4—H4A120.1C12—C13—H13A121.2
C4—C5—C6120.23 (11)C13—C14—C15121.24 (12)
C4—C5—H5A119.9C13—C14—H14A119.4
C6—C5—H5A119.9C15—C14—H14A119.4
C7—C6—C5120.36 (12)C16—C15—C14121.26 (12)
C7—C6—H6A119.8C16—C15—H15A119.4
C5—C6—H6A119.8C14—C15—H15A119.4
C6—C7—C8119.63 (11)C17—C16—C15117.44 (12)
C6—C7—H7A120.2C17—C16—H16A121.3
C8—C7—H7A120.2C15—C16—H16A121.3
C7—C8—C3119.98 (11)C16—C17—C12121.25 (11)
C7—C8—C9118.45 (11)C16—C17—C18128.40 (11)
C3—C8—C9121.57 (11)C12—C17—C18110.28 (10)
O3—C9—N1118.63 (11)O5—C18—C17127.71 (11)
O3—C9—C8123.28 (11)O5—C18—C10125.71 (11)
N1—C9—C8118.09 (10)C17—C18—C10106.57 (10)
C9—N1—C1—O1−177.84 (11)C1—N1—C10—C18131.20 (11)
C10—N1—C1—O1−2.54 (16)C9—N1—C10—C18−53.10 (13)
C9—N1—C1—C21.89 (16)C1—N1—C10—C11−109.16 (12)
C10—N1—C1—C2177.19 (9)C9—N1—C10—C1166.53 (13)
O1—C1—C2—O22.38 (17)N1—C10—C11—O438.25 (18)
N1—C1—C2—O2−177.36 (10)C18—C10—C11—O4164.10 (13)
O1—C1—C2—C3−177.50 (11)N1—C10—C11—C12−142.00 (11)
N1—C1—C2—C32.76 (15)C18—C10—C11—C12−16.15 (13)
O2—C2—C3—C4−2.32 (18)O4—C11—C12—C137.3 (2)
C1—C2—C3—C4177.55 (10)C10—C11—C12—C13−172.42 (13)
O2—C2—C3—C8177.08 (11)O4—C11—C12—C17−170.35 (14)
C1—C2—C3—C8−3.05 (16)C10—C11—C12—C179.92 (14)
C8—C3—C4—C51.19 (17)C17—C12—C13—C14−0.4 (2)
C2—C3—C4—C5−179.41 (11)C11—C12—C13—C14−177.81 (14)
C3—C4—C5—C60.42 (18)C12—C13—C14—C150.0 (2)
C4—C5—C6—C7−1.67 (19)C13—C14—C15—C160.3 (2)
C5—C6—C7—C81.27 (18)C14—C15—C16—C17−0.3 (2)
C6—C7—C8—C30.35 (17)C15—C16—C17—C12−0.1 (2)
C6—C7—C8—C9−179.58 (10)C15—C16—C17—C18176.66 (13)
C4—C3—C8—C7−1.59 (17)C13—C12—C17—C160.4 (2)
C2—C3—C8—C7179.01 (10)C11—C12—C17—C16178.31 (12)
C4—C3—C8—C9178.35 (10)C13—C12—C17—C18−176.86 (12)
C2—C3—C8—C9−1.06 (16)C11—C12—C17—C181.01 (15)
C1—N1—C9—O3174.03 (10)C16—C17—C18—O5−9.2 (2)
C10—N1—C9—O3−1.36 (15)C12—C17—C18—O5167.87 (12)
C1—N1—C9—C8−5.98 (16)C16—C17—C18—C10171.40 (13)
C10—N1—C9—C8178.63 (10)C12—C17—C18—C10−11.55 (14)
C7—C8—C9—O35.45 (17)N1—C10—C18—O5−37.31 (17)
C3—C8—C9—O3−174.48 (11)C11—C10—C18—O5−162.74 (12)
C7—C8—C9—N1−174.54 (10)N1—C10—C18—C17142.12 (10)
C3—C8—C9—N15.52 (16)C11—C10—C18—C1716.70 (12)
D—H···AD—HH···AD···AD—H···A
C6—H6A···O2i0.952.543.4862 (16)171
C7—H7A···O1i0.952.513.1397 (15)124
C10—H10A···O5ii1.002.243.2022 (15)161
C13—H13A···O5iii0.952.373.2852 (16)163
C16—H16A···O4iv0.952.503.3596 (17)150
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
C6H6AO2i 0.952.543.4862(16)171
C7H7AO1i 0.952.513.1397(15)124
C10H10AO5ii 1.002.243.2022(15)161
C13H13AO5iii 0.952.373.2852(16)163
C16H16AO4iv 0.952.503.3596(17)150

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  8 in total

1.  Design, synthesis, and biological evaluation of isoquinoline-1,3,4-trione derivatives as potent caspase-3 inhibitors.

Authors:  Yi-Hua Chen; Ya-Hui Zhang; Hua-Jie Zhang; Da-Zhi Liu; Min Gu; Jing-Ya Li; Fang Wu; Xing-Zu Zhu; Jia Li; Fa-Jun Nan
Journal:  J Med Chem       Date:  2006-03-09       Impact factor: 7.446

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Photoinduced tandem reactions of isoquinoline-1,3,4-trione with alkynes to build aza-polycycles.

Authors:  Haitao Yu; Jinbo Li; Zhuangfei Kou; Xuewen Du; Yi Wei; Hoong-Kun Fun; Jianhua Xu; Yan Zhang
Journal:  J Org Chem       Date:  2010-05-07       Impact factor: 4.354

4.  Photocycloadditions of substituted oxazoles with isoquinoline-1,3,4-trione--chemo-, regio-, diastereoselectivities and transformation of the photocycloadducts.

Authors:  Cheng-mei Huang; Heng Jiang; Ru-zhi Wang; Ching Kheng Quah; Hoong-Kun Fun; Yan Zhang
Journal:  Org Biomol Chem       Date:  2013-06-26       Impact factor: 3.876

5.  Facile synthesis of spiroisoquinolines based on photocycloaddition of isoquinoline-1,3,4-trione with oxazoles.

Authors:  Chengmei Huang; Haitao Yu; Zhengrui Miao; Jie Zhou; Shuai Wang; Hoong-Kun Fun; Jianhua Xu; Yan Zhang
Journal:  Org Biomol Chem       Date:  2011-04-06       Impact factor: 3.876

6.  Isoquinoline-1,3,4-trione derivatives inactivate caspase-3 by generation of reactive oxygen species.

Authors:  Jun-Qing Du; Jian Wu; Hua-Jie Zhang; Ya-Hui Zhang; Bei-Ying Qiu; Fang Wu; Yi-Hua Chen; Jing-Ya Li; Fa-Jun Nan; Jian-Ping Ding; Jia Li
Journal:  J Biol Chem       Date:  2008-09-02       Impact factor: 5.157

7.  3a,8a-Dihy-droxy-1,3,3a,8a-tetra-hydro-indeno-[1,2-d]imidazole-2,8-dione.

Authors:  Raza Murad Ghalib; Rokiah Hashim; Sayed Hasan Mehdi; Ching Kheng Quah; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-25

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  8 in total

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