Literature DB >> 21754886

3a,8a-Dihy-droxy-1,3,3a,8a-tetra-hydro-indeno-[1,2-d]imidazole-2,8-dione.

Raza Murad Ghalib, Rokiah Hashim, Sayed Hasan Mehdi, Ching Kheng Quah, Hoong-Kun Fun.   

Abstract

In the title mol-ecule, C(10)H(8)N(2)O(4), the imidazolidine ring adopts a twisted conformation. In the crystal, the mol-ecules are linked via a pair of bifurcated inter-molecular O-H⋯O hydrogen bonds, forming an inversion dimer. The dimers are further linked via N-H⋯O hydrogen bonds into a tape along the b axis.

Entities:  

Year:  2011        PMID: 21754886      PMCID: PMC3120574          DOI: 10.1107/S1600536811019039

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to and the properties of ninhydrinurea derivatives, see: Caputo et al. (1987 ▶); Kaupp et al. (2002 ▶); Sarra & Stephani (2000 ▶). For standard bond-length data, see: Allen et al. (1987 ▶). For ring conformations, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C10H8N2O4 M = 220.18 Triclinic, a = 6.7914 (2) Å b = 7.3201 (2) Å c = 9.5006 (3) Å α = 94.258 (1)° β = 102.773 (1)° γ = 93.725 (1)° V = 457.74 (2) Å3 Z = 2 Mo Kα radiation μ = 0.13 mm−1 T = 296 K 0.39 × 0.15 × 0.05 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.952, T max = 0.994 6684 measured reflections 2081 independent reflections 1634 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.110 S = 1.05 2081 reflections 177 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.25 e Å−3 Δρmin = −0.23 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811019039/is2712sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811019039/is2712Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811019039/is2712Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H8N2O4Z = 2
Mr = 220.18F(000) = 228
Triclinic, P1Dx = 1.598 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.7914 (2) ÅCell parameters from 2749 reflections
b = 7.3201 (2) Åθ = 3.1–27.6°
c = 9.5006 (3) ŵ = 0.13 mm1
α = 94.258 (1)°T = 296 K
β = 102.773 (1)°Plate, colourless
γ = 93.725 (1)°0.39 × 0.15 × 0.05 mm
V = 457.74 (2) Å3
Bruker SMART APEXII CCD area-detector diffractometer2081 independent reflections
Radiation source: fine-focus sealed tube1634 reflections with I > 2σ(I)
graphiteRint = 0.022
φ and ω scansθmax = 27.5°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −8→8
Tmin = 0.952, Tmax = 0.994k = −9→9
6684 measured reflectionsl = −12→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.110H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0511P)2 + 0.1396P] where P = (Fo2 + 2Fc2)/3
2081 reflections(Δ/σ)max = 0.001
177 parametersΔρmax = 0.25 e Å3
0 restraintsΔρmin = −0.23 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O11.26218 (17)0.50614 (16)0.93570 (12)0.0382 (3)
O20.73914 (19)0.13075 (18)0.94567 (13)0.0394 (3)
O30.59082 (18)0.39814 (17)0.75936 (14)0.0376 (3)
O40.8536 (2)−0.15340 (16)0.77260 (14)0.0464 (4)
N10.9431 (2)0.46753 (19)0.78463 (15)0.0345 (3)
N21.0569 (2)0.23428 (18)0.90164 (15)0.0323 (3)
C11.1014 (2)0.4122 (2)0.87930 (16)0.0294 (3)
C20.7722 (2)0.3301 (2)0.74365 (16)0.0284 (3)
C30.7435 (2)0.2416 (2)0.59059 (16)0.0279 (3)
C40.6895 (3)0.3254 (3)0.46259 (18)0.0371 (4)
C50.6634 (3)0.2169 (3)0.33296 (19)0.0431 (5)
C60.6904 (3)0.0303 (3)0.32948 (19)0.0424 (4)
C70.7470 (3)−0.0527 (2)0.45616 (18)0.0358 (4)
C80.7735 (2)0.0553 (2)0.58705 (17)0.0290 (3)
C90.8272 (2)−0.0003 (2)0.73466 (17)0.0303 (4)
C100.8466 (2)0.1716 (2)0.84121 (16)0.0286 (3)
H4A0.672 (3)0.461 (3)0.467 (2)0.048 (5)*
H5A0.617 (3)0.274 (3)0.245 (2)0.056 (6)*
H6A0.670 (3)−0.043 (3)0.237 (2)0.059 (6)*
H7A0.764 (3)−0.183 (3)0.455 (2)0.048 (6)*
H1O30.605 (4)0.440 (3)0.852 (3)0.070 (7)*
H1O20.735 (4)0.242 (4)1.002 (3)0.089 (9)*
H1N21.128 (3)0.188 (3)0.970 (2)0.041 (5)*
H1N10.935 (3)0.580 (3)0.765 (2)0.049 (6)*
U11U22U33U12U13U23
O10.0395 (7)0.0379 (7)0.0335 (6)−0.0069 (5)0.0049 (5)−0.0023 (5)
O20.0501 (8)0.0369 (7)0.0315 (6)−0.0046 (5)0.0115 (5)0.0064 (5)
O30.0399 (7)0.0384 (7)0.0335 (7)0.0137 (5)0.0045 (5)−0.0005 (5)
O40.0613 (9)0.0239 (6)0.0474 (8)0.0061 (5)−0.0038 (6)0.0071 (5)
N10.0422 (8)0.0218 (7)0.0354 (8)0.0001 (6)−0.0006 (6)0.0058 (6)
N20.0358 (8)0.0279 (7)0.0283 (7)0.0019 (6)−0.0040 (6)0.0056 (5)
C10.0363 (8)0.0285 (8)0.0225 (7)0.0006 (6)0.0066 (6)−0.0014 (6)
C20.0340 (8)0.0225 (7)0.0272 (8)0.0045 (6)0.0028 (6)0.0037 (6)
C30.0291 (8)0.0284 (8)0.0257 (7)0.0028 (6)0.0040 (6)0.0045 (6)
C40.0429 (10)0.0378 (9)0.0313 (9)0.0058 (7)0.0063 (7)0.0108 (7)
C50.0442 (10)0.0599 (12)0.0259 (9)0.0052 (9)0.0068 (7)0.0112 (8)
C60.0365 (10)0.0602 (12)0.0286 (9)0.0014 (8)0.0073 (7)−0.0056 (8)
C70.0327 (9)0.0353 (9)0.0367 (9)0.0032 (7)0.0056 (7)−0.0060 (7)
C80.0283 (8)0.0277 (8)0.0290 (8)0.0018 (6)0.0027 (6)0.0021 (6)
C90.0317 (8)0.0230 (7)0.0329 (8)0.0018 (6)−0.0001 (6)0.0036 (6)
C100.0341 (8)0.0246 (7)0.0250 (7)0.0021 (6)0.0015 (6)0.0050 (6)
O1—C11.2415 (18)C2—C101.578 (2)
O2—C101.3939 (19)C3—C41.390 (2)
O2—H1O20.94 (3)C3—C81.391 (2)
O3—C21.392 (2)C4—C51.385 (3)
O3—H1O30.89 (3)C4—H4A1.01 (2)
O4—C91.2145 (18)C5—C61.388 (3)
N1—C11.346 (2)C5—H5A0.96 (2)
N1—C21.4496 (19)C6—C71.378 (3)
N1—H1N10.86 (2)C6—H6A0.97 (2)
N2—C11.360 (2)C7—C81.393 (2)
N2—C101.447 (2)C7—H7A0.96 (2)
N2—H1N20.83 (2)C8—C91.464 (2)
C2—C31.513 (2)C9—C101.535 (2)
C10—O2—H1O2107.1 (16)C3—C4—H4A119.6 (11)
C2—O3—H1O3108.0 (16)C4—C5—C6121.62 (16)
C1—N1—C2113.31 (13)C4—C5—H5A117.3 (13)
C1—N1—H1N1122.8 (14)C6—C5—H5A120.9 (13)
C2—N1—H1N1122.7 (14)C7—C6—C5120.68 (17)
C1—N2—C10112.65 (13)C7—C6—H6A119.2 (13)
C1—N2—H1N2119.6 (13)C5—C6—H6A120.1 (13)
C10—N2—H1N2122.8 (13)C6—C7—C8118.12 (17)
O1—C1—N1126.05 (15)C6—C7—H7A121.2 (12)
O1—C1—N2125.48 (15)C8—C7—H7A120.6 (12)
N1—C1—N2108.47 (14)C3—C8—C7121.22 (15)
O3—C2—N1112.93 (13)C3—C8—C9110.13 (14)
O3—C2—C3108.64 (12)C7—C8—C9128.63 (15)
N1—C2—C3113.22 (13)O4—C9—C8128.27 (15)
O3—C2—C10115.83 (12)O4—C9—C10123.41 (14)
N1—C2—C10102.17 (12)C8—C9—C10108.32 (12)
C3—C2—C10103.71 (12)O2—C10—N2113.44 (12)
C4—C3—C8120.46 (15)O2—C10—C9107.94 (12)
C4—C3—C2127.23 (15)N2—C10—C9111.16 (13)
C8—C3—C2112.30 (13)O2—C10—C2116.95 (13)
C5—C4—C3117.90 (17)N2—C10—C2102.00 (11)
C5—C4—H4A122.5 (11)C9—C10—C2104.99 (12)
C2—N1—C1—O1−176.86 (15)C6—C7—C8—C9178.21 (15)
C2—N1—C1—N23.96 (19)C3—C8—C9—O4175.78 (16)
C10—N2—C1—O1170.05 (15)C7—C8—C9—O4−2.4 (3)
C10—N2—C1—N1−10.77 (19)C3—C8—C9—C10−4.17 (17)
C1—N1—C2—O3128.62 (15)C7—C8—C9—C10177.62 (15)
C1—N1—C2—C3−107.37 (15)C1—N2—C10—O2−114.40 (15)
C1—N1—C2—C103.51 (18)C1—N2—C10—C9123.74 (14)
O3—C2—C3—C460.0 (2)C1—N2—C10—C212.28 (17)
N1—C2—C3—C4−66.3 (2)O4—C9—C10—O2−47.5 (2)
C10—C2—C3—C4−176.23 (15)C8—C9—C10—O2132.48 (13)
O3—C2—C3—C8−118.71 (14)O4—C9—C10—N277.5 (2)
N1—C2—C3—C8114.97 (15)C8—C9—C10—N2−102.51 (14)
C10—C2—C3—C85.04 (17)O4—C9—C10—C2−172.92 (15)
C8—C3—C4—C51.1 (2)C8—C9—C10—C27.03 (16)
C2—C3—C4—C5−177.49 (16)O3—C2—C10—O2−7.76 (19)
C3—C4—C5—C6−0.2 (3)N1—C2—C10—O2115.42 (14)
C4—C5—C6—C7−0.8 (3)C3—C2—C10—O2−126.69 (13)
C5—C6—C7—C80.8 (3)O3—C2—C10—N2−132.12 (13)
C4—C3—C8—C7−1.2 (2)N1—C2—C10—N2−8.94 (15)
C2—C3—C8—C7177.66 (14)C3—C2—C10—N2108.95 (13)
C4—C3—C8—C9−179.53 (14)O3—C2—C10—C9111.83 (14)
C2—C3—C8—C9−0.71 (18)N1—C2—C10—C9−124.99 (13)
C6—C7—C8—C30.2 (2)C3—C2—C10—C9−7.09 (15)
D—H···AD—HH···AD···AD—H···A
O3—H1O3···O1i0.89 (3)2.02 (3)2.8653 (17)158 (2)
O2—H1O2···O1i0.95 (3)1.89 (3)2.8103 (17)163 (2)
N2—H1N2···O4ii0.83 (2)2.454 (19)3.1282 (19)139.3 (18)
N1—H1N1···O4iii0.86 (2)2.06 (2)2.8841 (18)159.4 (19)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H1O3⋯O1i0.89 (3)2.02 (3)2.8653 (17)158 (2)
O2—H1O2⋯O1i0.95 (3)1.89 (3)2.8103 (17)163 (2)
N2—H1N2⋯O4ii0.83 (2)2.454 (19)3.1282 (19)139.3 (18)
N1—H1N1⋯O4iii0.86 (2)2.06 (2)2.8841 (18)159.4 (19)

Symmetry codes: (i) ; (ii) ; (iii) .

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Journal:  Chemistry       Date:  2002-02-02       Impact factor: 5.236

3.  Structure validation in chemical crystallography.

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