Literature DB >> 25705507

Crystal structure of N-(propan-2-yl-carbamo-thio-yl)benzamide.

Jerry P Jasinski1, Mehmet Akkurt2, Shaaban K Mohamed3, Mohamed A Gad4, Mustafa R Albayati5.   

Abstract

In the crystal structure of the title compound, C11H14N2OS, the six atoms of the central C2N2OS residue are coplanar (r.m.s. deviation = 0.002 Å), which facilitates the formation of an intra-molecular N-H⋯O hydrogen bond, which closes an S(6) loop. The terminal phenyl ring is inclined with respect to the central plane [dihedral angle = 42.10 (6)°]. The most prominent feature of the crystal packing is the formation of {⋯HNCS}2 synthons resulting in centrosymmetric dimers.

Entities:  

Keywords:  conformation; crystal structure; hydrogen bonding; thio­urea

Year:  2015        PMID: 25705507      PMCID: PMC4331893          DOI: 10.1107/S2056989014027133

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For use of thio­ureas as building blocks in the synthesis of various organic compounds, see: Burgeson et al. (2012 ▸); Vega-Pérez et al. (2012 ▸); Yao et al. (2012 ▸); Shantharam et al. (2013 ▸); Yang et al. (2013 ▸). For use of thio­urea-containing compounds in medicinal applications, see: Rodriguez-Fernandez et al. (2005 ▸); Rauf et al. (2012 ▸).

Experimental

Crystal data

C11H14N2OS M = 222.30 Monoclinic, a = 11.2147 (4) Å b = 5.3988 (2) Å c = 19.6834 (7) Å β = 102.031 (4)° V = 1165.57 (7) Å3 Z = 4 Cu Kα radiation μ = 2.27 mm−1 T = 293 K 0.28 × 0.22 × 0.18 mm

Data collection

Agilent Xcalibur, Eos, Gemini diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2014 ▸) T min = 0.828, T max = 1.000 3844 measured reflections 2189 independent reflections 1944 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.146 S = 1.08 2189 reflections 146 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.37 e Å−3 Δρmin = −0.34 e Å−3

Data collection: CrysAlis PRO (Agilent, 2014 ▸); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS2014 (Gruene et al., 2014 ▸); program(s) used to refine structure: SHELXL2014 (Gruene et al., 2014 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸); software used to prepare material for publication: PLATON (Spek, 2009 ▸). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989014027133/tk5351sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989014027133/tk5351Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989014027133/tk5351Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989014027133/tk5351fig1.tif Perspective view of the title mol­ecule with atom labeling scheme and 50% probability ellipsoids. Click here for additional data file. b . DOI: 10.1107/S2056989014027133/tk5351fig2.tif Packing viewed down the b axis showing stacks of pairs of mol­ecules connected by N—H⋯S inter­actions. CCDC reference: 1038725 Additional supporting information: crystallographic information; 3D view; checkCIF report
C11H14N2OSF(000) = 472
Mr = 222.30Dx = 1.267 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54184 Å
Hall symbol: -P 2ybcCell parameters from 1804 reflections
a = 11.2147 (4) Åθ = 4.0–71.4°
b = 5.3988 (2) ŵ = 2.27 mm1
c = 19.6834 (7) ÅT = 293 K
β = 102.031 (4)°Prism, colourless
V = 1165.57 (7) Å30.28 × 0.22 × 0.18 mm
Z = 4
Agilent Xcalibur, Eos, Gemini diffractometer2189 independent reflections
Radiation source: Enhance (Cu) X-ray Source1944 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.025
Detector resolution: 16.0416 pixels mm-1θmax = 71.3°, θmin = 4.0°
ω scansh = −12→13
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2014)k = −6→5
Tmin = 0.828, Tmax = 1.000l = −18→24
3844 measured reflections
Refinement on F22 restraints
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.049H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.146w = 1/[σ2(Fo2) + (0.0871P)2 + 0.3862P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max < 0.001
2189 reflectionsΔρmax = 0.37 e Å3
146 parametersΔρmin = −0.34 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.60730 (5)0.80543 (14)0.08368 (3)0.0464 (2)
O10.86531 (13)1.0046 (3)−0.05679 (8)0.0392 (5)
N10.69070 (16)1.0345 (3)−0.01498 (9)0.0321 (5)
N20.82704 (16)0.7717 (3)0.05595 (9)0.0337 (5)
C10.63795 (19)1.4665 (4)−0.10695 (11)0.0334 (6)
C20.5930 (2)1.6272 (4)−0.16095 (12)0.0392 (6)
C30.6171 (2)1.5865 (4)−0.22650 (11)0.0414 (7)
C40.6865 (2)1.3853 (5)−0.23779 (11)0.0402 (7)
C50.73328 (19)1.2248 (4)−0.18386 (11)0.0342 (6)
C60.70827 (17)1.2641 (4)−0.11803 (10)0.0293 (5)
C70.76319 (18)1.0900 (4)−0.06135 (10)0.0310 (6)
C80.71668 (19)0.8697 (4)0.04084 (10)0.0322 (6)
C90.8684 (2)0.5923 (4)0.11200 (11)0.0389 (7)
C100.9666 (2)0.4305 (4)0.09293 (13)0.0452 (7)
C110.9154 (3)0.7308 (6)0.17988 (13)0.0592 (9)
H10.621201.49370−0.063200.0400*
H1N0.6216 (16)1.085 (4)−0.0236 (11)0.022 (5)*
H20.546401.76300−0.153400.0470*
H2N0.880 (2)0.814 (5)0.0317 (14)0.048 (8)*
H30.586601.69470−0.262700.0500*
H40.701901.35740−0.281800.0480*
H50.781201.09110−0.191400.0410*
H90.799500.487900.117300.0470*
H10A0.934000.342900.050700.0680*
H10B0.994700.313900.129600.0680*
H10C1.033600.532200.086400.0680*
H11A0.981800.836600.174800.0890*
H11B0.943200.613700.216500.0890*
H11C0.850900.829200.191100.0890*
U11U22U33U12U13U23
S10.0297 (3)0.0743 (5)0.0364 (3)0.0061 (2)0.0096 (2)0.0129 (3)
O10.0309 (8)0.0465 (9)0.0415 (8)0.0072 (6)0.0106 (6)0.0113 (7)
N10.0278 (8)0.0390 (9)0.0293 (8)0.0046 (7)0.0056 (6)0.0054 (7)
N20.0306 (9)0.0383 (10)0.0314 (9)0.0010 (7)0.0046 (7)0.0076 (7)
C10.0350 (10)0.0309 (10)0.0331 (10)−0.0033 (8)0.0041 (8)−0.0023 (8)
C20.0400 (11)0.0299 (10)0.0448 (12)−0.0012 (9)0.0019 (9)0.0025 (9)
C30.0418 (12)0.0405 (12)0.0377 (11)−0.0059 (9)−0.0014 (9)0.0124 (9)
C40.0369 (11)0.0544 (14)0.0291 (10)−0.0081 (10)0.0064 (8)0.0062 (9)
C50.0284 (10)0.0408 (11)0.0341 (10)−0.0027 (8)0.0080 (8)0.0032 (8)
C60.0260 (9)0.0304 (9)0.0300 (9)−0.0055 (7)0.0022 (7)0.0023 (8)
C70.0321 (10)0.0314 (10)0.0286 (9)−0.0038 (8)0.0043 (7)−0.0007 (8)
C80.0336 (10)0.0363 (10)0.0255 (9)−0.0020 (8)0.0033 (7)−0.0004 (8)
C90.0367 (11)0.0412 (12)0.0379 (11)0.0022 (9)0.0059 (9)0.0114 (9)
C100.0487 (13)0.0347 (11)0.0506 (13)0.0075 (10)0.0065 (10)0.0043 (10)
C110.0607 (16)0.079 (2)0.0334 (12)0.0280 (14)−0.0003 (11)0.0010 (12)
S1—C81.664 (2)C9—C111.526 (3)
O1—C71.220 (3)C9—C101.513 (3)
N1—C71.376 (3)C1—H10.9300
N1—C81.397 (3)C2—H20.9300
N2—C81.322 (3)C3—H30.9300
N2—C91.469 (3)C4—H40.9300
C1—C21.383 (3)C5—H50.9300
C1—C61.391 (3)C9—H90.9800
N1—H1N0.806 (19)C10—H10A0.9600
N2—H2N0.87 (2)C10—H10B0.9600
C2—C31.390 (3)C10—H10C0.9600
C3—C41.381 (3)C11—H11A0.9600
C4—C51.386 (3)C11—H11B0.9600
C5—C61.398 (3)C11—H11C0.9600
C6—C71.490 (3)
C7—N1—C8127.26 (18)C6—C1—H1120.00
C8—N2—C9124.57 (18)C1—C2—H2120.00
C2—C1—C6120.0 (2)C3—C2—H2120.00
C7—N1—H1N117.5 (15)C2—C3—H3120.00
C8—N1—H1N114.5 (15)C4—C3—H3120.00
C1—C2—C3120.3 (2)C3—C4—H4120.00
C8—N2—H2N119.2 (17)C5—C4—H4120.00
C9—N2—H2N116.2 (17)C4—C5—H5120.00
C2—C3—C4119.9 (2)C6—C5—H5120.00
C3—C4—C5120.3 (2)N2—C9—H9109.00
C4—C5—C6119.9 (2)C10—C9—H9109.00
C1—C6—C7122.51 (18)C11—C9—H9109.00
C5—C6—C7117.82 (18)C9—C10—H10A109.00
C1—C6—C5119.63 (19)C9—C10—H10B110.00
O1—C7—N1122.96 (19)C9—C10—H10C109.00
O1—C7—C6121.90 (18)H10A—C10—H10B110.00
N1—C7—C6115.14 (17)H10A—C10—H10C109.00
S1—C8—N1118.47 (16)H10B—C10—H10C109.00
S1—C8—N2123.87 (16)C9—C11—H11A110.00
N1—C8—N2117.65 (19)C9—C11—H11B109.00
N2—C9—C11109.39 (19)C9—C11—H11C109.00
C10—C9—C11111.3 (2)H11A—C11—H11B109.00
N2—C9—C10109.06 (18)H11A—C11—H11C109.00
C2—C1—H1120.00H11B—C11—H11C110.00
C7—N1—C8—N27.1 (3)C2—C1—C6—C7177.6 (2)
C7—N1—C8—S1−172.18 (17)C1—C2—C3—C4−0.2 (3)
C8—N1—C7—O1−3.3 (3)C2—C3—C4—C5−0.6 (3)
C8—N1—C7—C6176.95 (19)C3—C4—C5—C61.2 (3)
C9—N2—C8—S10.4 (3)C4—C5—C6—C7−178.5 (2)
C9—N2—C8—N1−178.83 (18)C4—C5—C6—C1−0.9 (3)
C8—N2—C9—C10151.8 (2)C1—C6—C7—O1−140.9 (2)
C8—N2—C9—C11−86.2 (3)C5—C6—C7—O136.7 (3)
C6—C1—C2—C30.4 (3)C5—C6—C7—N1−143.55 (19)
C2—C1—C6—C50.1 (3)C1—C6—C7—N138.9 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1N···S1i0.81 (2)2.66 (2)3.4439 (19)165 (2)
N2—H2N···O10.87 (2)2.00 (3)2.662 (2)132 (2)
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
N1H1NS1i 0.81(2)2.66(2)3.4439(19)165(2)
N2H2NO10.87(2)2.00(3)2.662(2)132(2)

Symmetry code: (i) .

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