Literature DB >> 25705488

Crystal structure of 4-(di-methyl-amino)-pyridinium 4-amino-benzoate dihydrate.

A Thirunavukkarasu1, A Silambarasan1, R Mohan Kumar1, P R Umarani2, G Chakkaravarthi3.   

Abstract

In the title hydrated mol-ecular salt, C7H11N2 (+)·C7H6NO2 (-)·2H2O, the cation is protonated at the pyridine N atom and the dihedral angle between the benzene ring and the CO2 (-) group in the anion is 8.5 (2)°. In the crystal, the cation forms an N-H⋯O hydrogen bond to the anion and the anion forms two N-H⋯O hydrogen bonds to adjacent water mol-ecules. Both water mol-ecules form two O-H⋯O hydrogen bonds to carboxyl-ate O atoms. In combination, these hydrogen bonds generate a three-dimensional network and two weak C-H⋯π inter-actions are also observed.

Entities:  

Keywords:  4-(di­methyl­amino)­pyridinium; 4-amino­benzoate; crystal structure; hydrate; hydrogen bonding

Year:  2015        PMID: 25705488      PMCID: PMC4331910          DOI: 10.1107/S2056989014026310

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For related structures, see: Dhanabalan et al. (2014 ▸); Lo & Ng (2008 ▸); Pereira Silva et al. (2010 ▸); Sivakumar et al. (2014 ▸).

Experimental

Crystal data

C7H11N2 +·C7H6NO2 −·2H2O M = 295.34 Triclinic, a = 9.3402 (7) Å b = 9.7999 (7) Å c = 10.2132 (8) Å α = 65.755 (3)° β = 69.983 (2)° γ = 89.212 (3)° V = 792.08 (10) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 295 K 0.30 × 0.24 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▸) T min = 0.973, T max = 0.982 16983 measured reflections 3337 independent reflections 2141 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.168 S = 1.03 3337 reflections 216 parameters 7 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.29 e Å−3 Δρmin = −0.23 e Å−3

Data collection: APEX2 (Bruker, 2004 ▸); cell refinement: SAINT (Bruker, 2004 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: PLATON (Spek, 2009 ▸); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989014026310/hb7333sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989014026310/hb7333Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989014026310/hb7333Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989014026310/hb7333fig1.tif The mol­ecular structure of (I), with 30% probability displacement ellipsoids for non-H atoms. Click here for additional data file. a . DOI: 10.1107/S2056989014026310/hb7333fig2.tif The packing of (I), viewed down a axis. Inter­molecular Hydrogen bonds are shown as dashed lines. H atoms not involved in hydrogen bonding have been omitted. CCDC reference: 1036769 Additional supporting information: crystallographic information; 3D view; checkCIF report
C7H11N2+·C7H6NO2·2H2OZ = 2
Mr = 295.34F(000) = 316
Triclinic, P1Dx = 1.238 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.3402 (7) ÅCell parameters from 1058 reflections
b = 9.7999 (7) Åθ = 2.3–26.7°
c = 10.2132 (8) ŵ = 0.09 mm1
α = 65.755 (3)°T = 295 K
β = 69.983 (2)°Block, colourless
γ = 89.212 (3)°0.30 × 0.24 × 0.20 mm
V = 792.08 (10) Å3
Bruker Kappa APEXII CCD diffractometer3337 independent reflections
Radiation source: fine-focus sealed tube2141 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.025
ω and φ scanθmax = 26.7°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −11→11
Tmin = 0.973, Tmax = 0.982k = −12→12
16983 measured reflectionsl = −12→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.168H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0709P)2 + 0.2681P] where P = (Fo2 + 2Fc2)/3
3337 reflections(Δ/σ)max < 0.001
216 parametersΔρmax = 0.29 e Å3
7 restraintsΔρmin = −0.23 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.2531 (2)0.4227 (2)0.2980 (2)0.0514 (5)
C20.3081 (2)0.4846 (2)0.1370 (2)0.0542 (5)
H20.34340.42300.08710.065*
C30.3104 (2)0.6362 (2)0.0517 (2)0.0531 (5)
H30.34920.6757−0.05560.064*
C40.2567 (2)0.7315 (2)0.1210 (2)0.0491 (4)
C50.2008 (2)0.6690 (2)0.2806 (2)0.0568 (5)
H50.16300.73050.33020.068*
C60.1998 (2)0.5183 (2)0.3680 (2)0.0581 (5)
H60.16310.47990.47510.070*
C70.2563 (2)0.8938 (2)0.0265 (3)0.0577 (5)
C80.1012 (3)0.3280 (2)0.9041 (3)0.0708 (6)
H80.00650.26660.96690.085*
C90.1039 (3)0.4747 (2)0.8167 (3)0.0655 (6)
H90.01180.51300.81970.079*
C100.2434 (3)0.5707 (2)0.7214 (3)0.0622 (6)
C110.3751 (3)0.5037 (3)0.7234 (3)0.0903 (9)
H110.47160.56210.66220.108*
C120.3649 (3)0.3550 (3)0.8129 (3)0.0892 (8)
H120.45460.31230.81140.107*
C130.3933 (4)0.8197 (4)0.5480 (5)0.159 (2)
H13A0.44640.81390.61530.238*
H13B0.37380.92150.50030.238*
H13C0.45570.79100.46950.238*
C140.1109 (4)0.7869 (3)0.6311 (4)0.1021 (10)
H14A0.04730.72950.60930.153*
H14B0.13940.88880.55150.153*
H14C0.05480.78770.72900.153*
N10.2553 (2)0.2736 (2)0.3824 (2)0.0707 (5)
H1A0.218 (3)0.236 (3)0.4832 (12)0.078 (8)*
H1B0.282 (3)0.218 (3)0.331 (3)0.082 (8)*
N20.2282 (2)0.2677 (2)0.9039 (2)0.0694 (5)
H2A0.218 (3)0.1687 (12)0.961 (2)0.079 (7)*
N30.2487 (3)0.7185 (2)0.6365 (3)0.0864 (7)
O10.18777 (18)0.97118 (16)0.09587 (19)0.0718 (5)
O20.3219 (2)0.94822 (18)−0.1168 (2)0.0820 (5)
O30.8669 (2)0.9002 (3)0.2848 (2)0.0923 (6)
H3A0.816 (4)0.948 (4)0.233 (4)0.138*
H3B0.9578 (17)0.921 (4)0.225 (4)0.138*
O40.6374 (2)0.9148 (2)0.7810 (3)0.0908 (6)
H4A0.5475 (17)0.930 (4)0.810 (4)0.136*
H4B0.693 (4)0.960 (4)0.803 (4)0.136*
U11U22U33U12U13U23
C10.0425 (10)0.0498 (10)0.0531 (11)0.0097 (8)−0.0151 (8)−0.0161 (9)
C20.0508 (11)0.0528 (11)0.0534 (11)0.0106 (8)−0.0121 (9)−0.0236 (9)
C30.0493 (11)0.0562 (11)0.0442 (10)0.0081 (8)−0.0124 (8)−0.0168 (9)
C40.0419 (10)0.0491 (10)0.0529 (11)0.0087 (8)−0.0171 (8)−0.0194 (9)
C50.0549 (11)0.0607 (12)0.0589 (12)0.0174 (9)−0.0196 (9)−0.0310 (10)
C60.0560 (12)0.0667 (13)0.0444 (11)0.0145 (9)−0.0153 (9)−0.0202 (9)
C70.0482 (11)0.0525 (11)0.0687 (14)0.0109 (9)−0.0246 (10)−0.0206 (10)
C80.0618 (13)0.0555 (12)0.0919 (17)0.0015 (10)−0.0354 (12)−0.0230 (12)
C90.0616 (13)0.0575 (12)0.0797 (15)0.0095 (10)−0.0316 (11)−0.0273 (11)
C100.0718 (14)0.0553 (12)0.0667 (13)0.0014 (10)−0.0410 (11)−0.0202 (10)
C110.0593 (14)0.0892 (18)0.0937 (19)−0.0039 (13)−0.0376 (14)−0.0048 (15)
C120.0643 (15)0.0915 (19)0.103 (2)0.0203 (14)−0.0437 (15)−0.0234 (16)
C130.131 (3)0.092 (2)0.177 (4)−0.044 (2)−0.096 (3)0.046 (2)
C140.130 (3)0.0622 (15)0.120 (3)0.0295 (16)−0.064 (2)−0.0303 (16)
N10.0811 (13)0.0549 (11)0.0565 (12)0.0159 (9)−0.0167 (10)−0.0130 (9)
N20.0796 (14)0.0520 (10)0.0877 (14)0.0123 (10)−0.0473 (11)−0.0274 (10)
N30.0961 (16)0.0599 (12)0.0969 (16)−0.0098 (11)−0.0602 (13)−0.0074 (11)
O10.0744 (10)0.0538 (8)0.0866 (11)0.0189 (7)−0.0286 (9)−0.0308 (8)
O20.0879 (12)0.0644 (10)0.0658 (11)0.0250 (8)−0.0198 (9)−0.0095 (8)
O30.0898 (13)0.1101 (15)0.0598 (11)0.0207 (12)−0.0261 (9)−0.0222 (10)
O40.0835 (13)0.1013 (14)0.1038 (14)0.0223 (11)−0.0322 (12)−0.0615 (12)
C1—N11.362 (3)C10—C111.389 (3)
C1—C61.389 (3)C11—C121.348 (4)
C1—C21.395 (3)C11—H110.9300
C2—C31.375 (3)C12—N21.338 (3)
C2—H20.9300C12—H120.9300
C3—C41.383 (3)C13—N31.446 (4)
C3—H30.9300C13—H13A0.9600
C4—C51.383 (3)C13—H13B0.9600
C4—C71.484 (3)C13—H13C0.9600
C5—C61.375 (3)C14—N31.451 (4)
C5—H50.9300C14—H14A0.9600
C6—H60.9300C14—H14B0.9600
C7—O21.248 (3)C14—H14C0.9600
C7—O11.267 (3)N1—H1A0.874 (10)
C8—N21.318 (3)N1—H1B0.885 (10)
C8—C91.341 (3)N2—H2A0.890 (10)
C8—H80.9300O3—H3A0.826 (10)
C9—C101.394 (3)O3—H3B0.825 (10)
C9—H90.9300O4—H4A0.823 (10)
C10—N31.339 (3)O4—H4B0.821 (10)
N1—C1—C6121.60 (19)C12—C11—C10120.8 (2)
N1—C1—C2120.45 (18)C12—C11—H11119.6
C6—C1—C2117.94 (17)C10—C11—H11119.6
C3—C2—C1120.44 (18)N2—C12—C11121.3 (2)
C3—C2—H2119.8N2—C12—H12119.3
C1—C2—H2119.8C11—C12—H12119.3
C2—C3—C4121.77 (18)N3—C13—H13A109.5
C2—C3—H3119.1N3—C13—H13B109.5
C4—C3—H3119.1H13A—C13—H13B109.5
C3—C4—C5117.50 (17)N3—C13—H13C109.5
C3—C4—C7120.77 (18)H13A—C13—H13C109.5
C5—C4—C7121.72 (18)H13B—C13—H13C109.5
C6—C5—C4121.59 (19)N3—C14—H14A109.5
C6—C5—H5119.2N3—C14—H14B109.5
C4—C5—H5119.2H14A—C14—H14B109.5
C5—C6—C1120.75 (18)N3—C14—H14C109.5
C5—C6—H6119.6H14A—C14—H14C109.5
C1—C6—H6119.6H14B—C14—H14C109.5
O2—C7—O1122.73 (19)C1—N1—H1A119.5 (17)
O2—C7—C4119.24 (19)C1—N1—H1B116.5 (17)
O1—C7—C4118.02 (19)H1A—N1—H1B123 (2)
N2—C8—C9122.2 (2)C8—N2—C12119.2 (2)
N2—C8—H8118.9C8—N2—H2A117.7 (16)
C9—C8—H8118.9C12—N2—H2A123.0 (16)
C8—C9—C10120.7 (2)C10—N3—C13121.4 (2)
C8—C9—H9119.7C10—N3—C14122.4 (2)
C10—C9—H9119.7C13—N3—C14116.2 (2)
N3—C10—C11122.6 (2)H3A—O3—H3B107 (4)
N3—C10—C9121.7 (2)H4A—O4—H4B112 (4)
C11—C10—C9115.7 (2)
N1—C1—C2—C3−177.90 (19)C5—C4—C7—O1−7.6 (3)
C6—C1—C2—C30.7 (3)N2—C8—C9—C10−0.3 (4)
C1—C2—C3—C4−1.1 (3)C8—C9—C10—N3−178.1 (2)
C2—C3—C4—C50.4 (3)C8—C9—C10—C110.5 (4)
C2—C3—C4—C7−178.23 (18)N3—C10—C11—C12178.6 (3)
C3—C4—C5—C60.7 (3)C9—C10—C11—C120.1 (4)
C7—C4—C5—C6179.30 (18)C10—C11—C12—N2−0.8 (5)
C4—C5—C6—C1−1.1 (3)C9—C8—N2—C12−0.5 (4)
N1—C1—C6—C5178.9 (2)C11—C12—N2—C81.0 (4)
C2—C1—C6—C50.4 (3)C11—C10—N3—C13−3.7 (4)
C3—C4—C7—O2−8.6 (3)C9—C10—N3—C13174.7 (3)
C5—C4—C7—O2172.8 (2)C11—C10—N3—C14178.0 (3)
C3—C4—C7—O1171.01 (18)C9—C10—N3—C14−3.5 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O3i0.87 (1)2.04 (1)2.898 (3)167 (2)
N1—H1B···O4i0.89 (1)2.04 (1)2.921 (3)174 (2)
N2—H2A···O1ii0.89 (1)1.81 (1)2.697 (2)174 (2)
O3—H3A···O2iii0.83 (1)2.03 (1)2.858 (3)175 (4)
O3—H3B···O1iv0.83 (1)2.04 (1)2.861 (3)174 (4)
O4—H4A···O2v0.82 (1)2.01 (1)2.834 (3)175 (4)
O4—H4B···O1vi0.82 (1)2.04 (1)2.847 (3)167 (4)
C9—H9···Cg2vii0.932.803.510 (3)134
C12—H12···Cg2i0.932.843.535 (3)132
Table 1

Hydrogen-bond geometry (, )

Cg2 is the centroid of the C1C6 benzene ring.

DHA DHHA D A DHA
N1H1AO3i 0.87(1)2.04(1)2.898(3)167(2)
N1H1BO4i 0.89(1)2.04(1)2.921(3)174(2)
N2H2AO1ii 0.89(1)1.81(1)2.697(2)174(2)
O3H3AO2iii 0.83(1)2.03(1)2.858(3)175(4)
O3H3BO1iv 0.83(1)2.04(1)2.861(3)174(4)
O4H4AO2v 0.82(1)2.01(1)2.834(3)175(4)
O4H4BO1vi 0.82(1)2.04(1)2.847(3)167(4)
C9H9Cg2vii 0.932.803.510(3)134
C12H12Cg2i 0.932.843.535(3)132

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Guanidinium 4-amino-benzoate.

Authors:  P S Pereira Silva; M Ramos Silva; J A Paixão; A Matos Beja
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-06

3.  Bis[4-(dimethyl-amino)-pyridinium] dibromidodichloridodimethyl-stannate(IV).

Authors:  Kong Mun Lo; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-10

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

5.  9-Amino-acridin-10-ium 4-amino-benzo-ate dihydrate.

Authors:  Nallathambi Dhanabalan; Kaliyaperumal Thanigaimani; Suhana Arshad; Ibrahim Abdul Razak; K Joseph Santhanaraj
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-05-17

6.  Crystal structure of bis[4-(di-methyl-amino)-pyridinium] bis(2-nitro-benzoate) trihydrate.

Authors:  N Sivakumar; S Muralidharan; G Chakkaravarthi; D Velmurugan; G Anbalagan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-09-20
  6 in total

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