| Literature DB >> 25705488 |
A Thirunavukkarasu1, A Silambarasan1, R Mohan Kumar1, P R Umarani2, G Chakkaravarthi3.
Abstract
In the title hydrated mol-ecular salt, C7H11N2 (+)·C7H6NO2 (-)·2H2O, the cation is protonated at the pyridine N atom and the dihedral angle between the benzene ring and the CO2 (-) group in the anion is 8.5 (2)°. In the crystal, the cation forms an N-H⋯O hydrogen bond to the anion and the anion forms two N-H⋯O hydrogen bonds to adjacent water mol-ecules. Both water mol-ecules form two O-H⋯O hydrogen bonds to carboxyl-ate O atoms. In combination, these hydrogen bonds generate a three-dimensional network and two weak C-H⋯π inter-actions are also observed.Entities:
Keywords: 4-(dimethylamino)pyridinium; 4-aminobenzoate; crystal structure; hydrate; hydrogen bonding
Year: 2015 PMID: 25705488 PMCID: PMC4331910 DOI: 10.1107/S2056989014026310
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
| C7H11N2+·C7H6NO2−·2H2O | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 1058 reflections | |
| θ = 2.3–26.7° | |
| µ = 0.09 mm−1 | |
| α = 65.755 (3)° | |
| β = 69.983 (2)° | Block, colourless |
| γ = 89.212 (3)° | 0.30 × 0.24 × 0.20 mm |
| Bruker Kappa APEXII CCD diffractometer | 3337 independent reflections |
| Radiation source: fine-focus sealed tube | 2141 reflections with |
| Graphite monochromator | |
| ω and φ scan | θmax = 26.7°, θmin = 2.3° |
| Absorption correction: multi-scan ( | |
| 16983 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3337 reflections | (Δ/σ)max < 0.001 |
| 216 parameters | Δρmax = 0.29 e Å−3 |
| 7 restraints | Δρmin = −0.23 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| C1 | 0.2531 (2) | 0.4227 (2) | 0.2980 (2) | 0.0514 (5) | |
| C2 | 0.3081 (2) | 0.4846 (2) | 0.1370 (2) | 0.0542 (5) | |
| H2 | 0.3434 | 0.4230 | 0.0871 | 0.065* | |
| C3 | 0.3104 (2) | 0.6362 (2) | 0.0517 (2) | 0.0531 (5) | |
| H3 | 0.3492 | 0.6757 | −0.0556 | 0.064* | |
| C4 | 0.2567 (2) | 0.7315 (2) | 0.1210 (2) | 0.0491 (4) | |
| C5 | 0.2008 (2) | 0.6690 (2) | 0.2806 (2) | 0.0568 (5) | |
| H5 | 0.1630 | 0.7305 | 0.3302 | 0.068* | |
| C6 | 0.1998 (2) | 0.5183 (2) | 0.3680 (2) | 0.0581 (5) | |
| H6 | 0.1631 | 0.4799 | 0.4751 | 0.070* | |
| C7 | 0.2563 (2) | 0.8938 (2) | 0.0265 (3) | 0.0577 (5) | |
| C8 | 0.1012 (3) | 0.3280 (2) | 0.9041 (3) | 0.0708 (6) | |
| H8 | 0.0065 | 0.2666 | 0.9669 | 0.085* | |
| C9 | 0.1039 (3) | 0.4747 (2) | 0.8167 (3) | 0.0655 (6) | |
| H9 | 0.0118 | 0.5130 | 0.8197 | 0.079* | |
| C10 | 0.2434 (3) | 0.5707 (2) | 0.7214 (3) | 0.0622 (6) | |
| C11 | 0.3751 (3) | 0.5037 (3) | 0.7234 (3) | 0.0903 (9) | |
| H11 | 0.4716 | 0.5621 | 0.6622 | 0.108* | |
| C12 | 0.3649 (3) | 0.3550 (3) | 0.8129 (3) | 0.0892 (8) | |
| H12 | 0.4546 | 0.3123 | 0.8114 | 0.107* | |
| C13 | 0.3933 (4) | 0.8197 (4) | 0.5480 (5) | 0.159 (2) | |
| H13A | 0.4464 | 0.8139 | 0.6153 | 0.238* | |
| H13B | 0.3738 | 0.9215 | 0.5003 | 0.238* | |
| H13C | 0.4557 | 0.7910 | 0.4695 | 0.238* | |
| C14 | 0.1109 (4) | 0.7869 (3) | 0.6311 (4) | 0.1021 (10) | |
| H14A | 0.0473 | 0.7295 | 0.6093 | 0.153* | |
| H14B | 0.1394 | 0.8888 | 0.5515 | 0.153* | |
| H14C | 0.0548 | 0.7877 | 0.7290 | 0.153* | |
| N1 | 0.2553 (2) | 0.2736 (2) | 0.3824 (2) | 0.0707 (5) | |
| H1A | 0.218 (3) | 0.236 (3) | 0.4832 (12) | 0.078 (8)* | |
| H1B | 0.282 (3) | 0.218 (3) | 0.331 (3) | 0.082 (8)* | |
| N2 | 0.2282 (2) | 0.2677 (2) | 0.9039 (2) | 0.0694 (5) | |
| H2A | 0.218 (3) | 0.1687 (12) | 0.961 (2) | 0.079 (7)* | |
| N3 | 0.2487 (3) | 0.7185 (2) | 0.6365 (3) | 0.0864 (7) | |
| O1 | 0.18777 (18) | 0.97118 (16) | 0.09587 (19) | 0.0718 (5) | |
| O2 | 0.3219 (2) | 0.94822 (18) | −0.1168 (2) | 0.0820 (5) | |
| O3 | 0.8669 (2) | 0.9002 (3) | 0.2848 (2) | 0.0923 (6) | |
| H3A | 0.816 (4) | 0.948 (4) | 0.233 (4) | 0.138* | |
| H3B | 0.9578 (17) | 0.921 (4) | 0.225 (4) | 0.138* | |
| O4 | 0.6374 (2) | 0.9148 (2) | 0.7810 (3) | 0.0908 (6) | |
| H4A | 0.5475 (17) | 0.930 (4) | 0.810 (4) | 0.136* | |
| H4B | 0.693 (4) | 0.960 (4) | 0.803 (4) | 0.136* |
| C1 | 0.0425 (10) | 0.0498 (10) | 0.0531 (11) | 0.0097 (8) | −0.0151 (8) | −0.0161 (9) |
| C2 | 0.0508 (11) | 0.0528 (11) | 0.0534 (11) | 0.0106 (8) | −0.0121 (9) | −0.0236 (9) |
| C3 | 0.0493 (11) | 0.0562 (11) | 0.0442 (10) | 0.0081 (8) | −0.0124 (8) | −0.0168 (9) |
| C4 | 0.0419 (10) | 0.0491 (10) | 0.0529 (11) | 0.0087 (8) | −0.0171 (8) | −0.0194 (9) |
| C5 | 0.0549 (11) | 0.0607 (12) | 0.0589 (12) | 0.0174 (9) | −0.0196 (9) | −0.0310 (10) |
| C6 | 0.0560 (12) | 0.0667 (13) | 0.0444 (11) | 0.0145 (9) | −0.0153 (9) | −0.0202 (9) |
| C7 | 0.0482 (11) | 0.0525 (11) | 0.0687 (14) | 0.0109 (9) | −0.0246 (10) | −0.0206 (10) |
| C8 | 0.0618 (13) | 0.0555 (12) | 0.0919 (17) | 0.0015 (10) | −0.0354 (12) | −0.0230 (12) |
| C9 | 0.0616 (13) | 0.0575 (12) | 0.0797 (15) | 0.0095 (10) | −0.0316 (11) | −0.0273 (11) |
| C10 | 0.0718 (14) | 0.0553 (12) | 0.0667 (13) | 0.0014 (10) | −0.0410 (11) | −0.0202 (10) |
| C11 | 0.0593 (14) | 0.0892 (18) | 0.0937 (19) | −0.0039 (13) | −0.0376 (14) | −0.0048 (15) |
| C12 | 0.0643 (15) | 0.0915 (19) | 0.103 (2) | 0.0203 (14) | −0.0437 (15) | −0.0234 (16) |
| C13 | 0.131 (3) | 0.092 (2) | 0.177 (4) | −0.044 (2) | −0.096 (3) | 0.046 (2) |
| C14 | 0.130 (3) | 0.0622 (15) | 0.120 (3) | 0.0295 (16) | −0.064 (2) | −0.0303 (16) |
| N1 | 0.0811 (13) | 0.0549 (11) | 0.0565 (12) | 0.0159 (9) | −0.0167 (10) | −0.0130 (9) |
| N2 | 0.0796 (14) | 0.0520 (10) | 0.0877 (14) | 0.0123 (10) | −0.0473 (11) | −0.0274 (10) |
| N3 | 0.0961 (16) | 0.0599 (12) | 0.0969 (16) | −0.0098 (11) | −0.0602 (13) | −0.0074 (11) |
| O1 | 0.0744 (10) | 0.0538 (8) | 0.0866 (11) | 0.0189 (7) | −0.0286 (9) | −0.0308 (8) |
| O2 | 0.0879 (12) | 0.0644 (10) | 0.0658 (11) | 0.0250 (8) | −0.0198 (9) | −0.0095 (8) |
| O3 | 0.0898 (13) | 0.1101 (15) | 0.0598 (11) | 0.0207 (12) | −0.0261 (9) | −0.0222 (10) |
| O4 | 0.0835 (13) | 0.1013 (14) | 0.1038 (14) | 0.0223 (11) | −0.0322 (12) | −0.0615 (12) |
| C1—N1 | 1.362 (3) | C10—C11 | 1.389 (3) |
| C1—C6 | 1.389 (3) | C11—C12 | 1.348 (4) |
| C1—C2 | 1.395 (3) | C11—H11 | 0.9300 |
| C2—C3 | 1.375 (3) | C12—N2 | 1.338 (3) |
| C2—H2 | 0.9300 | C12—H12 | 0.9300 |
| C3—C4 | 1.383 (3) | C13—N3 | 1.446 (4) |
| C3—H3 | 0.9300 | C13—H13A | 0.9600 |
| C4—C5 | 1.383 (3) | C13—H13B | 0.9600 |
| C4—C7 | 1.484 (3) | C13—H13C | 0.9600 |
| C5—C6 | 1.375 (3) | C14—N3 | 1.451 (4) |
| C5—H5 | 0.9300 | C14—H14A | 0.9600 |
| C6—H6 | 0.9300 | C14—H14B | 0.9600 |
| C7—O2 | 1.248 (3) | C14—H14C | 0.9600 |
| C7—O1 | 1.267 (3) | N1—H1A | 0.874 (10) |
| C8—N2 | 1.318 (3) | N1—H1B | 0.885 (10) |
| C8—C9 | 1.341 (3) | N2—H2A | 0.890 (10) |
| C8—H8 | 0.9300 | O3—H3A | 0.826 (10) |
| C9—C10 | 1.394 (3) | O3—H3B | 0.825 (10) |
| C9—H9 | 0.9300 | O4—H4A | 0.823 (10) |
| C10—N3 | 1.339 (3) | O4—H4B | 0.821 (10) |
| N1—C1—C6 | 121.60 (19) | C12—C11—C10 | 120.8 (2) |
| N1—C1—C2 | 120.45 (18) | C12—C11—H11 | 119.6 |
| C6—C1—C2 | 117.94 (17) | C10—C11—H11 | 119.6 |
| C3—C2—C1 | 120.44 (18) | N2—C12—C11 | 121.3 (2) |
| C3—C2—H2 | 119.8 | N2—C12—H12 | 119.3 |
| C1—C2—H2 | 119.8 | C11—C12—H12 | 119.3 |
| C2—C3—C4 | 121.77 (18) | N3—C13—H13A | 109.5 |
| C2—C3—H3 | 119.1 | N3—C13—H13B | 109.5 |
| C4—C3—H3 | 119.1 | H13A—C13—H13B | 109.5 |
| C3—C4—C5 | 117.50 (17) | N3—C13—H13C | 109.5 |
| C3—C4—C7 | 120.77 (18) | H13A—C13—H13C | 109.5 |
| C5—C4—C7 | 121.72 (18) | H13B—C13—H13C | 109.5 |
| C6—C5—C4 | 121.59 (19) | N3—C14—H14A | 109.5 |
| C6—C5—H5 | 119.2 | N3—C14—H14B | 109.5 |
| C4—C5—H5 | 119.2 | H14A—C14—H14B | 109.5 |
| C5—C6—C1 | 120.75 (18) | N3—C14—H14C | 109.5 |
| C5—C6—H6 | 119.6 | H14A—C14—H14C | 109.5 |
| C1—C6—H6 | 119.6 | H14B—C14—H14C | 109.5 |
| O2—C7—O1 | 122.73 (19) | C1—N1—H1A | 119.5 (17) |
| O2—C7—C4 | 119.24 (19) | C1—N1—H1B | 116.5 (17) |
| O1—C7—C4 | 118.02 (19) | H1A—N1—H1B | 123 (2) |
| N2—C8—C9 | 122.2 (2) | C8—N2—C12 | 119.2 (2) |
| N2—C8—H8 | 118.9 | C8—N2—H2A | 117.7 (16) |
| C9—C8—H8 | 118.9 | C12—N2—H2A | 123.0 (16) |
| C8—C9—C10 | 120.7 (2) | C10—N3—C13 | 121.4 (2) |
| C8—C9—H9 | 119.7 | C10—N3—C14 | 122.4 (2) |
| C10—C9—H9 | 119.7 | C13—N3—C14 | 116.2 (2) |
| N3—C10—C11 | 122.6 (2) | H3A—O3—H3B | 107 (4) |
| N3—C10—C9 | 121.7 (2) | H4A—O4—H4B | 112 (4) |
| C11—C10—C9 | 115.7 (2) | ||
| N1—C1—C2—C3 | −177.90 (19) | C5—C4—C7—O1 | −7.6 (3) |
| C6—C1—C2—C3 | 0.7 (3) | N2—C8—C9—C10 | −0.3 (4) |
| C1—C2—C3—C4 | −1.1 (3) | C8—C9—C10—N3 | −178.1 (2) |
| C2—C3—C4—C5 | 0.4 (3) | C8—C9—C10—C11 | 0.5 (4) |
| C2—C3—C4—C7 | −178.23 (18) | N3—C10—C11—C12 | 178.6 (3) |
| C3—C4—C5—C6 | 0.7 (3) | C9—C10—C11—C12 | 0.1 (4) |
| C7—C4—C5—C6 | 179.30 (18) | C10—C11—C12—N2 | −0.8 (5) |
| C4—C5—C6—C1 | −1.1 (3) | C9—C8—N2—C12 | −0.5 (4) |
| N1—C1—C6—C5 | 178.9 (2) | C11—C12—N2—C8 | 1.0 (4) |
| C2—C1—C6—C5 | 0.4 (3) | C11—C10—N3—C13 | −3.7 (4) |
| C3—C4—C7—O2 | −8.6 (3) | C9—C10—N3—C13 | 174.7 (3) |
| C5—C4—C7—O2 | 172.8 (2) | C11—C10—N3—C14 | 178.0 (3) |
| C3—C4—C7—O1 | 171.01 (18) | C9—C10—N3—C14 | −3.5 (4) |
| H··· | ||||
| N1—H1 | 0.87 (1) | 2.04 (1) | 2.898 (3) | 167 (2) |
| N1—H1 | 0.89 (1) | 2.04 (1) | 2.921 (3) | 174 (2) |
| N2—H2 | 0.89 (1) | 1.81 (1) | 2.697 (2) | 174 (2) |
| O3—H3 | 0.83 (1) | 2.03 (1) | 2.858 (3) | 175 (4) |
| O3—H3 | 0.83 (1) | 2.04 (1) | 2.861 (3) | 174 (4) |
| O4—H4 | 0.82 (1) | 2.01 (1) | 2.834 (3) | 175 (4) |
| O4—H4 | 0.82 (1) | 2.04 (1) | 2.847 (3) | 167 (4) |
| C9—H9··· | 0.93 | 2.80 | 3.510 (3) | 134 |
| C12—H12··· | 0.93 | 2.84 | 3.535 (3) | 132 |
Hydrogen-bond geometry (, )
Cg2 is the centroid of the C1C6 benzene ring.
|
|
| H |
|
|
|---|---|---|---|---|
| N1H1 | 0.87(1) | 2.04(1) | 2.898(3) | 167(2) |
| N1H1 | 0.89(1) | 2.04(1) | 2.921(3) | 174(2) |
| N2H2 | 0.89(1) | 1.81(1) | 2.697(2) | 174(2) |
| O3H3 | 0.83(1) | 2.03(1) | 2.858(3) | 175(4) |
| O3H3 | 0.83(1) | 2.04(1) | 2.861(3) | 174(4) |
| O4H4 | 0.82(1) | 2.01(1) | 2.834(3) | 175(4) |
| O4H4 | 0.82(1) | 2.04(1) | 2.847(3) | 167(4) |
| C9H9 | 0.93 | 2.80 | 3.510(3) | 134 |
| C12H12 | 0.93 | 2.84 | 3.535(3) | 132 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .