Literature DB >> 25701087

Enantiomeric discrimination of chiral organic salts by chiral aza-15-crown-5 ether with C 1 symmetry: experimental and theoretical approaches.

Safak Özhan Kocakaya1, Yılmaz Turgut, Necmettin Pirinççioglu.   

Abstract

The work involves an experimental ((1)H NMR) and theoretical (MD, MM-PBSA and DFT) investigation of the molecular recognition and discrimination properties of a chiral aza-15-crown-5 against methyl esters of alanine, phenylalanine and valine hydrochloride salts. The results indicate that the receptor binds enantiomers with moderate binding constants (88-1,389 M(-1)), with phenylalanine being more discriminated. The difference in experimental binding free energies (ΔG(R) - ΔG(S)) for alanine, phenylalanine and valine enantiomers were calculated as -0.36, -1.58 and 0.80 kcal mol(-1), respectively. The differences in theoretical binding energies were calculated by MM-PBSA (ΔE(R)PB - ΔE(S)PB=) as -0.30, -1.45 and 0.88, by B3LYP/6-31+G(d) as -1.17, -0.84 and 0.74 and by M06-2X/6-31+G(d) as -1.40, -3.26 and 1.66 kcal mol(-1). The data obtained give valuable information regarding the molecular recognition mode of the organoammonium complexes of chiral aza-crown ether with C 1 symmetry, which may be relevant to biological systems.

Entities:  

Mesh:

Substances:

Year:  2015        PMID: 25701087     DOI: 10.1007/s00894-015-2604-6

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  52 in total

1.  Fast, efficient generation of high-quality atomic charges. AM1-BCC model: II. Parameterization and validation.

Authors:  Araz Jakalian; David B Jack; Christopher I Bayly
Journal:  J Comput Chem       Date:  2002-12       Impact factor: 3.376

2.  Dispersion corrections to density functionals for water aromatic interactions.

Authors:  Urs Zimmerli; Michele Parrinello; Petros Koumoutsakos
Journal:  J Chem Phys       Date:  2004-02-08       Impact factor: 3.488

3.  Design of Density Functionals by Combining the Method of Constraint Satisfaction with Parametrization for Thermochemistry, Thermochemical Kinetics, and Noncovalent Interactions.

Authors:  Yan Zhao; Nathan E Schultz; Donald G Truhlar
Journal:  J Chem Theory Comput       Date:  2006-03       Impact factor: 6.006

4.  Density functional theory augmented with an empirical dispersion term. Interaction energies and geometries of 80 noncovalent complexes compared with ab initio quantum mechanics calculations.

Authors:  Petr Jurecka; Jirí Cerný; Pavel Hobza; Dennis R Salahub
Journal:  J Comput Chem       Date:  2007-01-30       Impact factor: 3.376

5.  Exchange-hole dipole moment and the dispersion interaction: high-order dispersion coefficients.

Authors:  Axel D Becke; Erin R Johnson
Journal:  J Chem Phys       Date:  2006-01-07       Impact factor: 3.488

6.  Comparison of multiple Amber force fields and development of improved protein backbone parameters.

Authors:  Viktor Hornak; Robert Abel; Asim Okur; Bentley Strockbine; Adrian Roitberg; Carlos Simmerling
Journal:  Proteins       Date:  2006-11-15

7.  Predicting absolute ligand binding free energies to a simple model site.

Authors:  David L Mobley; Alan P Graves; John D Chodera; Andrea C McReynolds; Brian K Shoichet; Ken A Dill
Journal:  J Mol Biol       Date:  2007-06-08       Impact factor: 5.469

8.  Asymmetric catalysis: science and opportunities (Nobel lecture).

Authors:  Ryoji Noyori
Journal:  Angew Chem Int Ed Engl       Date:  2002-06-17       Impact factor: 15.336

9.  Validation and use of the MM-PBSA approach for drug discovery.

Authors:  Bernd Kuhn; Paul Gerber; Tanja Schulz-Gasch; Martin Stahl
Journal:  J Med Chem       Date:  2005-06-16       Impact factor: 7.446

10.  Searching for new reactivity (Nobel lecture).

Authors:  K Barry Sharpless
Journal:  Angew Chem Int Ed Engl       Date:  2002-06-17       Impact factor: 15.336

View more
  2 in total

1.  A facile synthesis of amide-based receptors under microwave conditions: investigation of their anion recognition properties by experimental and computational tools.

Authors:  Gülşen Öztürk; Salih Subari; Sevil Şeker; Mahmut Toğrul; Şafak Özhan Kocakay; Selami Ercan; Necmettin Pirinççioğlu
Journal:  J Mol Model       Date:  2017-08-02       Impact factor: 1.810

Review 2.  Recent Developments and Applications of the MMPBSA Method.

Authors:  Changhao Wang; D'Artagnan Greene; Li Xiao; Ruxi Qi; Ray Luo
Journal:  Front Mol Biosci       Date:  2018-01-10
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.