Literature DB >> 25697342

No X-chromosome dosage compensation in human proteomes.

Xiaoshu Chen1, Jianzhi Zhang2.   

Abstract

The X and Y chromosomes of placental and marsupial mammals originated from a pair of autosomes. Ohno proposed that the expression levels of X-linked genes must have been doubled in males to compensate for the degeneration of their Y homologs. Recent mRNA sequencing experiments, however, found at most weak or infrequent X-chromosome dosage compensation. Nonetheless, dosage compensation need not occur at the mRNA level, because ultimately it is the protein concentration that matters. Analyzing human proteomic data from 22 tissues, we here report that X upregulation is absent at the protein level, indicating that Ohno's hypothesis is also invalid at the protein level.
© The Author 2015. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Entities:  

Keywords:  Ohno’s hypothesis; protein expression; proteomics; sex chromosome evolution

Mesh:

Substances:

Year:  2015        PMID: 25697342      PMCID: PMC4462673          DOI: 10.1093/molbev/msv036

Source DB:  PubMed          Journal:  Mol Biol Evol        ISSN: 0737-4038            Impact factor:   16.240


  18 in total

1.  Relative overexpression of X-linked genes in mouse embryonic stem cells is consistent with Ohno's hypothesis.

Authors:  Hong Lin; John A Halsall; Philipp Antczak; Laura P O'Neill; Francesco Falciani; Bryan M Turner
Journal:  Nat Genet       Date:  2011-11-28       Impact factor: 38.330

2.  Evidence for dosage compensation between the X chromosome and autosomes in mammals.

Authors:  Peter V Kharchenko; Ruibin Xi; Peter J Park
Journal:  Nat Genet       Date:  2011-11-28       Impact factor: 38.330

Review 3.  X chromosome dosage compensation: how mammals keep the balance.

Authors:  Bernhard Payer; Jeannie T Lee
Journal:  Annu Rev Genet       Date:  2008       Impact factor: 16.830

4.  Evidence for compensatory upregulation of expressed X-linked genes in mammals, Caenorhabditis elegans and Drosophila melanogaster.

Authors:  Xinxian Deng; Joseph B Hiatt; Di Kim Nguyen; Sevinc Ercan; David Sturgill; LaDeana W Hillier; Felix Schlesinger; Carrie A Davis; Valerie J Reinke; Thomas R Gingeras; Jay Shendure; Robert H Waterston; Brian Oliver; Jason D Lieb; Christine M Disteche
Journal:  Nat Genet       Date:  2011-10-23       Impact factor: 38.330

5.  Mammalian X chromosome inactivation evolved as a dosage-compensation mechanism for dosage-sensitive genes on the X chromosome.

Authors:  Eugénie Pessia; Takashi Makino; Marc Bailly-Bechet; Aoife McLysaght; Gabriel A B Marais
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-05       Impact factor: 11.205

6.  DNA methylation profiles of human active and inactive X chromosomes.

Authors:  Andrew J Sharp; Elisavet Stathaki; Eugenia Migliavacca; Manisha Brahmachary; Stephen B Montgomery; Yann Dupre; Stylianos E Antonarakis
Journal:  Genome Res       Date:  2011-08-23       Impact factor: 9.043

Review 7.  Insights into the regulation of protein abundance from proteomic and transcriptomic analyses.

Authors:  Christine Vogel; Edward M Marcotte
Journal:  Nat Rev Genet       Date:  2012-03-13       Impact factor: 53.242

8.  RNA sequencing shows no dosage compensation of the active X-chromosome.

Authors:  Yuanyan Xiong; Xiaoshu Chen; Zhidong Chen; Xunzhang Wang; Suhua Shi; Xueqin Wang; Jianzhi Zhang; Xionglei He
Journal:  Nat Genet       Date:  2010-12       Impact factor: 38.330

9.  Mechanisms and evolutionary patterns of mammalian and avian dosage compensation.

Authors:  Philippe Julien; David Brawand; Magali Soumillon; Anamaria Necsulea; Angélica Liechti; Frédéric Schütz; Tasman Daish; Frank Grützner; Henrik Kaessmann
Journal:  PLoS Biol       Date:  2012-05-15       Impact factor: 8.029

10.  Ensembl 2012.

Authors:  Paul Flicek; M Ridwan Amode; Daniel Barrell; Kathryn Beal; Simon Brent; Denise Carvalho-Silva; Peter Clapham; Guy Coates; Susan Fairley; Stephen Fitzgerald; Laurent Gil; Leo Gordon; Maurice Hendrix; Thibaut Hourlier; Nathan Johnson; Andreas K Kähäri; Damian Keefe; Stephen Keenan; Rhoda Kinsella; Monika Komorowska; Gautier Koscielny; Eugene Kulesha; Pontus Larsson; Ian Longden; William McLaren; Matthieu Muffato; Bert Overduin; Miguel Pignatelli; Bethan Pritchard; Harpreet Singh Riat; Graham R S Ritchie; Magali Ruffier; Michael Schuster; Daniel Sobral; Y Amy Tang; Kieron Taylor; Stephen Trevanion; Jana Vandrovcova; Simon White; Mark Wilson; Steven P Wilder; Bronwen L Aken; Ewan Birney; Fiona Cunningham; Ian Dunham; Richard Durbin; Xosé M Fernández-Suarez; Jennifer Harrow; Javier Herrero; Tim J P Hubbard; Anne Parker; Glenn Proctor; Giulietta Spudich; Jan Vogel; Andy Yates; Amonida Zadissa; Stephen M J Searle
Journal:  Nucleic Acids Res       Date:  2011-11-15       Impact factor: 16.971

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  16 in total

Review 1.  Evolution of vertebrate sex chromosomes and dosage compensation.

Authors:  Jennifer A Marshall Graves
Journal:  Nat Rev Genet       Date:  2015-11-30       Impact factor: 53.242

2.  The X to Autosome Expression Ratio in Haploid and Diploid Human Embryonic Stem Cells.

Authors:  Xiaoshu Chen; Jianzhi Zhang
Journal:  Mol Biol Evol       Date:  2016-09-04       Impact factor: 16.240

3.  The Constrained Maximal Expression Level Owing to Haploidy Shapes Gene Content on the Mammalian X Chromosome.

Authors:  Laurence D Hurst; Avazeh T Ghanbarian; Alistair R R Forrest; Lukasz Huminiecki
Journal:  PLoS Biol       Date:  2015-12-18       Impact factor: 8.029

Review 4.  Dosage compensation of the sex chromosomes and autosomes.

Authors:  Christine M Disteche
Journal:  Semin Cell Dev Biol       Date:  2016-04-22       Impact factor: 7.727

5.  Evolution of gene dosage on the Z-chromosome of schistosome parasites.

Authors:  Marion A L Picard; Celine Cosseau; Sabrina Ferré; Thomas Quack; Christoph G Grevelding; Yohann Couté; Beatriz Vicoso
Journal:  Elife       Date:  2018-07-25       Impact factor: 8.140

6.  Quantitative Mass Spectrometry Reveals Partial Translational Regulation for Dosage Compensation in Chicken.

Authors:  Severin Uebbing; Anne Konzer; Luohao Xu; Niclas Backström; Björn Brunström; Jonas Bergquist; Hans Ellegren
Journal:  Mol Biol Evol       Date:  2015-06-24       Impact factor: 16.240

Review 7.  Cis- and trans-regulation in X inactivation.

Authors:  Joke G van Bemmel; Hegias Mira-Bontenbal; Joost Gribnau
Journal:  Chromosoma       Date:  2015-07-22       Impact factor: 4.316

8.  Dosage Compensation in the African Malaria Mosquito Anopheles gambiae.

Authors:  Graham Rose; Elzbieta Krzywinska; Jan Kim; Loic Revuelta; Luca Ferretti; Jaroslaw Krzywinski
Journal:  Genome Biol Evol       Date:  2016-01-18       Impact factor: 3.416

9.  Sex Chromosome Dosage Compensation in Heliconius Butterflies: Global yet Still Incomplete?

Authors:  James R Walters; Thomas J Hardcastle; Chris D Jiggins
Journal:  Genome Biol Evol       Date:  2015-09-02       Impact factor: 3.416

Review 10.  Evolution of Sex Chromosome Dosage Compensation in Animals: A Beautiful Theory, Undermined by Facts and Bedeviled by Details.

Authors:  Liuqi Gu; James R Walters
Journal:  Genome Biol Evol       Date:  2017-09-01       Impact factor: 3.416

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