Literature DB >> 25693804

Interactions of the Antiviral Factor Interferon Gamma-Inducible Protein 16 (IFI16) Mediate Immune Signaling and Herpes Simplex Virus-1 Immunosuppression.

Benjamin A Diner1, Krystal K Lum1, Aaron Javitt1, Ileana M Cristea2.   

Abstract

The interferon-inducible protein IFI16 has emerged as a critical antiviral factor and sensor of viral DNA. IFI16 binds nuclear viral DNA, triggering expression of antiviral cytokines during infection with herpesviruses. The knowledge of the mechanisms and protein interactions through which IFI16 exerts its antiviral functions remains limited. Here, we provide the first characterization of endogenous IFI16 interactions following infection with the prominent human pathogen herpes simplex virus 1 (HSV-1). By integrating proteomics and virology approaches, we identified and validated IFI16 interactions with both viral and host proteins that are involved in HSV-1 immunosuppressive mechanisms and host antiviral responses. We discover that during early HSV-1 infection, IFI16 is recruited to sub-nuclear puncta and subsequently targeted for degradation. We observed that the HSV-1 E3 ubiquitin ligase ICP0 is necessary, but not sufficient, for the proteasom e-mediated degradation of IFI16 following infection. We substantiate that this ICP0-mediated mechanism suppresses IFI16-dependent immune responses. Utilizing an HSV-1 strain that lacks ICP0 ubiquitin ligase activity provided a system for studying IFI16-dependent cytokine responses to HSV-1, as IFI16 levels were maintained throughout infection. We next defined temporal IFI16 interactions during this immune signaling response. We discovered and validated interactions with the viral protein ICP8 and cellular ND10 nuclear body components, sites at which HSV-1 DNA is present during infection. These interactions may be critical for IFI16 to bind to nuclear viral DNA. Altogether, our results provide critical insights into both viral inhibition of IFI16 and interactions that can contribute to IFI16 antiviral functions.
© 2015 by The American Society for Biochemistry and Molecular Biology, Inc.

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Year:  2015        PMID: 25693804      PMCID: PMC4563720          DOI: 10.1074/mcp.M114.047068

Source DB:  PubMed          Journal:  Mol Cell Proteomics        ISSN: 1535-9476            Impact factor:   5.911


  69 in total

1.  Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells.

Authors:  Nils A Kulak; Garwin Pichler; Igor Paron; Nagarjuna Nagaraj; Matthias Mann
Journal:  Nat Methods       Date:  2014-02-02       Impact factor: 28.547

2.  Nuclear IFI16 induction of IRF-3 signaling during herpesviral infection and degradation of IFI16 by the viral ICP0 protein.

Authors:  Megan H Orzalli; Neal A DeLuca; David M Knipe
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-01       Impact factor: 11.205

3.  IFI16 senses DNA forms of the lentiviral replication cycle and controls HIV-1 replication.

Authors:  Martin R Jakobsen; Rasmus O Bak; Annika Andersen; Randi K Berg; Søren B Jensen; Jin Tengchuan; Tengchuan Jin; Anders Laustsen; Kathrine Hansen; Lars Ostergaard; Katherine A Fitzgerald; T Sam Xiao; Jacob G Mikkelsen; Trine H Mogensen; Søren R Paludan
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-23       Impact factor: 11.205

4.  Cyclic GMP-AMP synthase is a cytosolic DNA sensor that activates the type I interferon pathway.

Authors:  Lijun Sun; Jiaxi Wu; Fenghe Du; Xiang Chen; Zhijian J Chen
Journal:  Science       Date:  2012-12-20       Impact factor: 47.728

5.  Components of promyelocytic leukemia nuclear bodies (ND10) act cooperatively to repress herpesvirus infection.

Authors:  Mandy Glass; Roger D Everett
Journal:  J Virol       Date:  2012-12-05       Impact factor: 5.103

Review 6.  Proteomics-based methods for discovery, quantification, and validation of protein-protein interactions.

Authors:  Yana V Miteva; Hanna G Budayeva; Ileana M Cristea
Journal:  Anal Chem       Date:  2012-12-12       Impact factor: 6.986

7.  Nuclear interferon-inducible protein 16 promotes silencing of herpesviral and transfected DNA.

Authors:  Megan H Orzalli; Sara E Conwell; Christian Berrios; James A DeCaprio; David M Knipe
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-06       Impact factor: 11.205

8.  IFI16 restricts HSV-1 replication by accumulating on the hsv-1 genome, repressing HSV-1 gene expression, and directly or indirectly modulating histone modifications.

Authors:  Karen E Johnson; Virginie Bottero; Stephanie Flaherty; Sujoy Dutta; Vivek Vikram Singh; Bala Chandran
Journal:  PLoS Pathog       Date:  2014-11-06       Impact factor: 6.823

9.  NF-κB repressing factor downregulates basal expression and mycobacterium tuberculosis induced IP-10 and IL-8 synthesis via interference with NF-κB in monocytes.

Authors:  Kuo-Hsiung Huang; Chun-Hua Wang; Chien-Huang Lin; Han-Pin Kuo
Journal:  J Biomed Sci       Date:  2014-08-19       Impact factor: 8.410

10.  Structural basis for viral 5'-PPP-RNA recognition by human IFIT proteins.

Authors:  Yazan M Abbas; Andreas Pichlmair; Maria W Górna; Giulio Superti-Furga; Bhushan Nagar
Journal:  Nature       Date:  2013-01-13       Impact factor: 49.962

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  50 in total

Review 1.  The emerging role of nuclear viral DNA sensors.

Authors:  Benjamin A Diner; Krystal K Lum; Ileana M Cristea
Journal:  J Biol Chem       Date:  2015-09-09       Impact factor: 5.157

Review 2.  A proteomics perspective on viral DNA sensors in host defense and viral immune evasion mechanisms.

Authors:  Marni S Crow; Aaron Javitt; Ileana M Cristea
Journal:  J Mol Biol       Date:  2015-02-26       Impact factor: 5.469

3.  Transcriptional Elongation of HSV Immediate Early Genes by the Super Elongation Complex Drives Lytic Infection and Reactivation from Latency.

Authors:  Roberto Alfonso-Dunn; Anne-Marie W Turner; Pierre M Jean Beltran; Jesse H Arbuckle; Hanna G Budayeva; Ileana M Cristea; Thomas M Kristie
Journal:  Cell Host Microbe       Date:  2017-04-12       Impact factor: 21.023

4.  ER-directed TREX1 limits cGAS activation at micronuclei.

Authors:  Lisa Mohr; Eléonore Toufektchan; Patrick von Morgen; Kevan Chu; Aakanksha Kapoor; John Maciejowski
Journal:  Mol Cell       Date:  2021-01-20       Impact factor: 17.970

5.  Interactome and Proteome Dynamics Uncover Immune Modulatory Associations of the Pathogen Sensing Factor cGAS.

Authors:  Krystal K Lum; Bokai Song; Joel D Federspiel; Benjamin A Diner; Timothy Howard; Ileana M Cristea
Journal:  Cell Syst       Date:  2018-11-21       Impact factor: 10.304

6.  Human Antiviral Protein IFIX Suppresses Viral Gene Expression during Herpes Simplex Virus 1 (HSV-1) Infection and Is Counteracted by Virus-induced Proteasomal Degradation.

Authors:  Marni S Crow; Ileana M Cristea
Journal:  Mol Cell Proteomics       Date:  2017-01-11       Impact factor: 5.911

Review 7.  Innate Sensing of DNA Virus Genomes.

Authors:  Zhe Ma; Guoxin Ni; Blossom Damania
Journal:  Annu Rev Virol       Date:  2018-09-29       Impact factor: 10.431

8.  Relative Contributions of Herpes Simplex Virus 1 ICP0 and vhs to Loss of Cellular IFI16 Vary in Different Human Cell Types.

Authors:  Megan H Orzalli; Nicole M Broekema; David M Knipe
Journal:  J Virol       Date:  2016-08-26       Impact factor: 5.103

Review 9.  Diverse mechanisms evolved by DNA viruses to inhibit early host defenses.

Authors:  Marni S Crow; Krystal K Lum; Xinlei Sheng; Bokai Song; Ileana M Cristea
Journal:  Crit Rev Biochem Mol Biol       Date:  2016-09-21       Impact factor: 8.250

10.  Nuclear Innate Immune DNA Sensor IFI16 Is Degraded during Lytic Reactivation of Kaposi's Sarcoma-Associated Herpesvirus (KSHV): Role of IFI16 in Maintenance of KSHV Latency.

Authors:  Arunava Roy; Dipanjan Dutta; Jawed Iqbal; Gina Pisano; Olsi Gjyshi; Mairaj Ahmed Ansari; Binod Kumar; Bala Chandran
Journal:  J Virol       Date:  2016-09-12       Impact factor: 5.103

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