Literature DB >> 25693562

Epigenomics: Roadmap for regulation.

Casey E Romanoski1, Christopher K Glass1, Hendrik G Stunnenberg2, Laurence Wilson3, Genevieve Almouzni3.   

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Year:  2015        PMID： 25693562     DOI： 10.1038/518314a

Source DB:  PubMed          Journal:  Nature        ISSN： 0028-0836            Impact factor:   49.962


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  14 in total

Review 1.  Histone chaperones: assisting histone traffic and nucleosome dynamics.

Authors:  Zachary A Gurard-Levin; Jean-Pierre Quivy; Geneviève Almouzni
Journal:  Annu Rev Biochem       Date:  2014       Impact factor: 23.643

2.  Dissecting neural differentiation regulatory networks through epigenetic footprinting.

Authors:  Michael J Ziller; Reuven Edri; Yechiel Elkabetz; Alexander Meissner; Yakey Yaffe; Julie Donaghey; Ramona Pop; William Mallard; Robbyn Issner; Casey A Gifford; Alon Goren; Jeff Xing; Hongcang Gu; Davide Cachiarelli; Alexander Tsankov; Chuck Epstein; John R Rinn; Tarjei S Mikkelsen; Oliver Kohlbacher; Andreas Gnirke; Bradley E Bernstein
Journal:  Nature       Date:  2014-12-24       Impact factor: 49.962

3.  Transcription factor binding dynamics during human ES cell differentiation.

Authors:  Alexander M Tsankov; Hongcang Gu; Veronika Akopian; Michael J Ziller; Julie Donaghey; Ido Amit; Andreas Gnirke; Alexander Meissner
Journal:  Nature       Date:  2015-02-19       Impact factor: 49.962

4.  Integrative analysis of haplotype-resolved epigenomes across human tissues.

Authors:  Danny Leung; Inkyung Jung; Nisha Rajagopal; Anthony Schmitt; Siddarth Selvaraj; Ah Young Lee; Chia-An Yen; Shin Lin; Yiing Lin; Yunjiang Qiu; Wei Xie; Feng Yue; Manoj Hariharan; Pradipta Ray; Samantha Kuan; Lee Edsall; Hongbo Yang; Neil C Chi; Michael Q Zhang; Joseph R Ecker; Bing Ren
Journal:  Nature       Date:  2015-02-19       Impact factor: 49.962

5.  Conserved epigenomic signals in mice and humans reveal immune basis of Alzheimer's disease.

Authors:  Elizabeta Gjoneska; Andreas R Pfenning; Hansruedi Mathys; Gerald Quon; Anshul Kundaje; Li-Huei Tsai; Manolis Kellis
Journal:  Nature       Date:  2015-02-19       Impact factor: 49.962

6.  Cell-of-origin chromatin organization shapes the mutational landscape of cancer.

Authors:  Paz Polak; Rosa Karlić; Amnon Koren; Robert Thurman; Richard Sandstrom; Michael Lawrence; Alex Reynolds; Eric Rynes; Kristian Vlahoviček; John A Stamatoyannopoulos; Shamil R Sunyaev
Journal:  Nature       Date:  2015-02-19       Impact factor: 49.962

7.  The NHGRI GWAS Catalog, a curated resource of SNP-trait associations.

Authors:  Danielle Welter; Jacqueline MacArthur; Joannella Morales; Tony Burdett; Peggy Hall; Heather Junkins; Alan Klemm; Paul Flicek; Teri Manolio; Lucia Hindorff; Helen Parkinson
Journal:  Nucleic Acids Res       Date:  2013-12-06       Impact factor: 16.971

8.  Tissue-resident macrophage enhancer landscapes are shaped by the local microenvironment.

Authors:  Yonit Lavin; Deborah Winter; Ronnie Blecher-Gonen; Eyal David; Hadas Keren-Shaul; Miriam Merad; Steffen Jung; Ido Amit
Journal:  Cell       Date:  2014-12-04       Impact factor: 41.582

9.  An integrated encyclopedia of DNA elements in the human genome.

Authors: 
Journal:  Nature       Date:  2012-09-06       Impact factor: 49.962

10.  Integrative analysis of 111 reference human epigenomes.

Authors:  Anshul Kundaje; Wouter Meuleman; Jason Ernst; Misha Bilenky; Angela Yen; Alireza Heravi-Moussavi; Pouya Kheradpour; Zhizhuo Zhang; Jianrong Wang; Michael J Ziller; Viren Amin; John W Whitaker; Matthew D Schultz; Lucas D Ward; Abhishek Sarkar; Gerald Quon; Richard S Sandstrom; Matthew L Eaton; Yi-Chieh Wu; Andreas R Pfenning; Xinchen Wang; Melina Claussnitzer; Yaping Liu; Cristian Coarfa; R Alan Harris; Noam Shoresh; Charles B Epstein; Elizabeta Gjoneska; Danny Leung; Wei Xie; R David Hawkins; Ryan Lister; Chibo Hong; Philippe Gascard; Andrew J Mungall; Richard Moore; Eric Chuah; Angela Tam; Theresa K Canfield; R Scott Hansen; Rajinder Kaul; Peter J Sabo; Mukul S Bansal; Annaick Carles; Jesse R Dixon; Kai-How Farh; Soheil Feizi; Rosa Karlic; Ah-Ram Kim; Ashwinikumar Kulkarni; Daofeng Li; Rebecca Lowdon; GiNell Elliott; Tim R Mercer; Shane J Neph; Vitor Onuchic; Paz Polak; Nisha Rajagopal; Pradipta Ray; Richard C Sallari; Kyle T Siebenthall; Nicholas A Sinnott-Armstrong; Michael Stevens; Robert E Thurman; Jie Wu; Bo Zhang; Xin Zhou; Arthur E Beaudet; Laurie A Boyer; Philip L De Jager; Peggy J Farnham; Susan J Fisher; David Haussler; Steven J M Jones; Wei Li; Marco A Marra; Michael T McManus; Shamil Sunyaev; James A Thomson; Thea D Tlsty; Li-Huei Tsai; Wei Wang; Robert A Waterland; Michael Q Zhang; Lisa H Chadwick; Bradley E Bernstein; Joseph F Costello; Joseph R Ecker; Martin Hirst; Alexander Meissner; Aleksandar Milosavljevic; Bing Ren; John A Stamatoyannopoulos; Ting Wang; Manolis Kellis
Journal:  Nature       Date:  2015-02-19       Impact factor: 69.504
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  81 in total

1.  Comparison of Illumina 450K and EPIC arrays in placental DNA methylation.

Authors:  Nora Fernandez-Jimenez; Catherine Allard; Luigi Bouchard; Patrice Perron; Mariona Bustamante; Jose Ramon Bilbao; Marie-France Hivert
Journal:  Epigenetics       Date:  2019-06-28       Impact factor: 4.528

2.  Robust Method for Detecting Convergent Shifts in Evolutionary Rates.

Authors:  Raghavendran Partha; Amanda Kowalczyk; Nathan L Clark; Maria Chikina
Journal:  Mol Biol Evol       Date:  2019-08-01       Impact factor: 16.240

Review 3.  Characterization of noncoding regulatory DNA in the human genome.

Authors:  Ran Elkon; Reuven Agami
Journal:  Nat Biotechnol       Date:  2017-08-08       Impact factor: 54.908

4.  Re: Genome-Wide Association Study Identifies African-Specific Susceptibility Loci in African Americans With Inflammatory Bowel Disease.

Authors:  Ravi Misra; Naila Arebi
Journal:  Gastroenterology       Date:  2017-05-04       Impact factor: 22.682

5.  Tissue- and strain-specific effects of a genotoxic carcinogen 1,3-butadiene on chromatin and transcription.

Authors:  Jennifer W Israel; Grace A Chappell; Jeremy M Simon; Sebastian Pott; Alexias Safi; Lauren Lewis; Paul Cotney; Hala S Boulos; Wanda Bodnar; Jason D Lieb; Gregory E Crawford; Terrence S Furey; Ivan Rusyn
Journal:  Mamm Genome       Date:  2018-02-10       Impact factor: 2.957

6.  Identification of the Regulatory Elements and Target Genes of Megakaryopoietic Transcription Factor MEF2C.

Authors:  Xianguo Kong; Lin Ma; Edward Chen; Chad A Shaw; Leonard C Edelstein
Journal:  Thromb Haemost       Date:  2019-02-07       Impact factor: 5.249

7.  Computational challenges in modeling gene regulatory events.

Authors:  Abhijeet Pataskar; Vijay K Tiwari
Journal:  Transcription       Date:  2016-07-08

Review 8.  Epigenetics in osteoarthritis: Potential of HDAC inhibitors as therapeutics.

Authors:  Nazir M Khan; Tariq M Haqqi
Journal:  Pharmacol Res       Date:  2017-08-18       Impact factor: 7.658

9.  Annotations capturing cell type-specific TF binding explain a large fraction of disease heritability.

Authors:  Bryce van de Geijn; Hilary Finucane; Steven Gazal; Farhad Hormozdiari; Tiffany Amariuta; Xuanyao Liu; Alexander Gusev; Po-Ru Loh; Yakir Reshef; Gleb Kichaev; Soumya Raychauduri; Alkes L Price
Journal:  Hum Mol Genet       Date:  2020-05-08       Impact factor: 6.150

10.  Genome-Wide Association Study Identifies African-Specific Susceptibility Loci in African Americans With Inflammatory Bowel Disease.

Authors:  Steven R Brant; David T Okou; Claire L Simpson; David J Cutler; Talin Haritunians; Jonathan P Bradfield; Pankaj Chopra; Jarod Prince; Ferdouse Begum; Archana Kumar; Chengrui Huang; Suresh Venkateswaran; Lisa W Datta; Zhi Wei; Kelly Thomas; Lisa J Herrinton; Jan-Micheal A Klapproth; Antonio J Quiros; Jenifer Seminerio; Zhenqiu Liu; Jonathan S Alexander; Robert N Baldassano; Sharon Dudley-Brown; Raymond K Cross; Themistocles Dassopoulos; Lee A Denson; Tanvi A Dhere; Gerald W Dryden; John S Hanson; Jason K Hou; Sunny Z Hussain; Jeffrey S Hyams; Kim L Isaacs; Howard Kader; Michael D Kappelman; Jeffry Katz; Richard Kellermayer; Barbara S Kirschner; John F Kuemmerle; John H Kwon; Mark Lazarev; Ellen Li; David Mack; Peter Mannon; Dedrick E Moulton; Rodney D Newberry; Bankole O Osuntokun; Ashish S Patel; Shehzad A Saeed; Stephan R Targan; John F Valentine; Ming-Hsi Wang; Martin Zonca; John D Rioux; Richard H Duerr; Mark S Silverberg; Judy H Cho; Hakon Hakonarson; Michael E Zwick; Dermot P B McGovern; Subra Kugathasan
Journal:  Gastroenterology       Date:  2016-09-28       Impact factor: 22.682
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