Literature DB >> 25688287

Theoretical Analysis of Dynamic Processes for Interacting Molecular Motors.

Hamid Teimouri1, Anatoly B Kolomeisky1, Kareem Mehrabiani1.   

Abstract

Biological transport is supported by collective dynamics of enzymatic molecules that are called motor proteins or molecular motors. Experiments suggest that motor proteins interact locally via short-range potentials. We investigate the fundamental role of these interactions by analyzing a new class of totally asymmetric exclusion processes where interactions are accounted for in a thermodynamically consistent fashion. It allows us to connect explicitly microscopic features of motor proteins with their collective dynamic properties. Theoretical analysis that combines various mean-field calculations and computer simulations suggests that dynamic properties of molecular motors strongly depend on interactions, and correlations are stronger for interacting motor proteins. Surprisingly, it is found that there is an optimal strength of interactions (weak repulsion) that leads to a maximal particle flux. It is also argued that molecular motors transport is more sensitive to attractive interactions. Applications of these results for kinesin motor proteins are discussed.

Entities:  

Year:  2015        PMID: 25688287      PMCID: PMC4326232          DOI: 10.1088/1751-8113/48/6/065001

Source DB:  PubMed          Journal:  J Phys A Math Theor        ISSN: 1751-8113            Impact factor:   2.132


  14 in total

1.  Dynamics and cooperativity of microtubule decoration by the motor protein kinesin.

Authors:  A Vilfan; E Frey; F Schwabl; M Thormählen; Y H Song; E Mandelkow
Journal:  J Mol Biol       Date:  2001-10-05       Impact factor: 5.469

2.  Phase coexistence in driven one-dimensional transport.

Authors:  A Parmeggiani; T Franosch; E Frey
Journal:  Phys Rev Lett       Date:  2003-02-28       Impact factor: 9.161

3.  How the interplay between mechanical and nonmechanical interactions affects multiple kinesin dynamics.

Authors:  Karthik Uppulury; Artem K Efremov; Jonathan W Driver; D Kenneth Jamison; Michael R Diehl; Anatoly B Kolomeisky
Journal:  J Phys Chem B       Date:  2012-07-11       Impact factor: 2.991

Review 4.  Collective dynamics of interacting molecular motors.

Authors:  O Campàs; Y Kafri; K B Zeldovich; J Casademunt; J-F Joanny
Journal:  Phys Rev Lett       Date:  2006-07-19       Impact factor: 9.161

5.  Processive movement of single kinesins on crowded microtubules visualized using quantum dots.

Authors:  Arne Seitz; Thomas Surrey
Journal:  EMBO J       Date:  2006-01-12       Impact factor: 11.598

Review 6.  Moving into the cell: single-molecule studies of molecular motors in complex environments.

Authors:  Claudia Veigel; Christoph F Schmidt
Journal:  Nat Rev Mol Cell Biol       Date:  2011-02-16       Impact factor: 94.444

7.  Efficiency at maximum power of interacting molecular machines.

Authors:  N Golubeva; A Imparato
Journal:  Phys Rev Lett       Date:  2012-11-08       Impact factor: 9.161

8.  Entrainment and unit velocity: surprises in an accelerated exclusion process.

Authors:  Jiajia Dong; Stefan Klumpp; Royce K P Zia
Journal:  Phys Rev Lett       Date:  2012-09-27       Impact factor: 9.161

Review 9.  Molecular motors: a theorist's perspective.

Authors:  Anatoly B Kolomeisky; Michael E Fisher
Journal:  Annu Rev Phys Chem       Date:  2007       Impact factor: 12.703

Review 10.  Motor proteins and molecular motors: how to operate machines at the nanoscale.

Authors:  Anatoly B Kolomeisky
Journal:  J Phys Condens Matter       Date:  2013-10-07       Impact factor: 2.333

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  7 in total

1.  Delineating elastic properties of kinesin linker and their sensitivity to point mutations.

Authors:  Michał Świątek; Ewa Gudowska-Nowak
Journal:  Sci Rep       Date:  2020-03-16       Impact factor: 4.379

Review 2.  Collective dynamics of processive cytoskeletal motors.

Authors:  R Tyler McLaughlin; Michael R Diehl; Anatoly B Kolomeisky
Journal:  Soft Matter       Date:  2016-01-07       Impact factor: 3.679

3.  A deterministic model for one-dimensional excluded flow with local interactions.

Authors:  Yoram Zarai; Michael Margaliot; Anatoly B Kolomeisky
Journal:  PLoS One       Date:  2017-08-10       Impact factor: 3.240

4.  Drag-induced directionality switching of kinesin-5 Cin8 revealed by cluster-motility analysis.

Authors:  Himanshu Pandey; Emanuel Reithmann; Alina Goldstein-Levitin; Jawdat Al-Bassam; Erwin Frey; Larisa Gheber
Journal:  Sci Adv       Date:  2021-02-05       Impact factor: 14.136

5.  Modeling transport of extended interacting objects with drop-off phenomenon.

Authors:  Aditi Jain; Arvind Kumar Gupta
Journal:  PLoS One       Date:  2022-05-02       Impact factor: 3.752

6.  Exponential decay of spatial correlation in driven diffusive system: A universal feature of macroscopic homogeneous state.

Authors:  Qing-Yi Hao; Rui Jiang; Mao-Bin Hu; Bin Jia; Wen-Xu Wang
Journal:  Sci Rep       Date:  2016-01-25       Impact factor: 4.379

7.  Crowding and Pausing Strongly Affect Dynamics of Kinesin-1 Motors along Microtubules.

Authors:  Matthias Rank; Erwin Frey
Journal:  Biophys J       Date:  2018-07-25       Impact factor: 4.033

  7 in total

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