Literature DB >> 25685856

A Generative Model for Probabilistic Label Fusion of Multimodal Data.

Juan Eugenio Iglesias1, Mert Rory Sabuncu2, Koen Van Leemput3.   

Abstract

The maturity of registration methods, in combination with the increasing processing power of computers, has made multi-atlas segmentation methods practical. The problem of merging the deformed label maps from the atlases is known as label fusion. Even though label fusion has been well studied for intramodality scenarios, it remains relatively unexplored when the nature of the target data is multimodal or when its modality is different from that of the atlases. In this paper, we review the literature on label fusion methods and also present an extension of our previously published algorithm to the general case in which the target data are multimodal. The method is based on a generative model that exploits the consistency of voxel intensities within the target scan based on the current estimate of the segmentation. Using brain MRI scans acquired with a multiecho FLASH sequence, we compare the method with majority voting, statistical-atlas-based segmentation, the popular package FreeSurfer and an adaptive local multi-atlas segmentation method. The results show that our approach produces highly accurate segmentations (Dice 86.3% across 22 brain structures of interest), outperforming the competing methods.

Entities:  

Year:  2012        PMID: 25685856      PMCID: PMC4324537          DOI: 10.1007/978-3-642-33530-3_10

Source DB:  PubMed          Journal:  Multimodal Brain Image Anal (2012)


  25 in total

1.  Evaluation of atlas selection strategies for atlas-based image segmentation with application to confocal microscopy images of bee brains.

Authors:  Torsten Rohlfing; Robert Brandt; Randolf Menzel; Calvin R Maurer
Journal:  Neuroimage       Date:  2004-04       Impact factor: 6.556

2.  Label fusion in atlas-based segmentation using a selective and iterative method for performance level estimation (SIMPLE).

Authors:  Thomas Robin Langerak; Uulke A van der Heide; Alexis N T J Kotte; Max A Viergever; Marco van Vulpen; Josien P W Pluim
Journal:  IEEE Trans Med Imaging       Date:  2010-07-26       Impact factor: 10.048

3.  Segmenting images by combining selected atlases on manifold.

Authors:  Yihui Cao; Yuan Yuan; Xuelong Li; Baris Turkbey; Peter L Choyke; Pingkun Yan
Journal:  Med Image Comput Comput Assist Interv       Date:  2011

4.  Sequence-independent segmentation of magnetic resonance images.

Authors:  Bruce Fischl; David H Salat; André J W van der Kouwe; Nikos Makris; Florent Ségonne; Brian T Quinn; Anders M Dale
Journal:  Neuroimage       Date:  2004       Impact factor: 6.556

5.  Effects of registration regularization and atlas sharpness on segmentation accuracy.

Authors:  B T Thomas Yeo; Mert R Sabuncu; Rahul Desikan; Bruce Fischl; Polina Golland
Journal:  Med Image Anal       Date:  2008-06-19       Impact factor: 8.545

6.  Automatic segmentation of the prostate in 3D MR images by atlas matching using localized mutual information.

Authors:  Stefan Klein; Uulke A van der Heide; Irene M Lips; Marco van Vulpen; Marius Staring; Josien P W Pluim
Journal:  Med Phys       Date:  2008-04       Impact factor: 4.071

7.  Using spanning graphs for efficient image registration.

Authors:  Mert R Sabuncu; Peter Ramadge
Journal:  IEEE Trans Image Process       Date:  2008-05       Impact factor: 10.856

8.  New variants of a method of MRI scale standardization.

Authors:  L G Nyúl; J K Udupa; X Zhang
Journal:  IEEE Trans Med Imaging       Date:  2000-02       Impact factor: 10.048

9.  A GENERATIVE MODEL FOR MULTI-ATLAS SEGMENTATION ACROSS MODALITIES.

Authors:  Juan Eugenio Iglesias; Mert Rory Sabuncu; Koen Van Leemput
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2012

10.  Automatic anatomical brain MRI segmentation combining label propagation and decision fusion.

Authors:  Rolf A Heckemann; Joseph V Hajnal; Paul Aljabar; Daniel Rueckert; Alexander Hammers
Journal:  Neuroimage       Date:  2006-07-24       Impact factor: 6.556

View more
  6 in total

1.  A probabilistic, non-parametric framework for inter-modality label fusion.

Authors:  Juan Eugenio Iglesias; Mert Rory Sabuncu; Koen Van Leemput
Journal:  Med Image Comput Comput Assist Interv       Date:  2013

2.  A unified framework for cross-modality multi-atlas segmentation of brain MRI.

Authors:  Juan Eugenio Iglesias; Mert Rory Sabuncu; Koen Van Leemput
Journal:  Med Image Anal       Date:  2013-08-19       Impact factor: 8.545

Review 3.  Multi-atlas segmentation of biomedical images: A survey.

Authors:  Juan Eugenio Iglesias; Mert R Sabuncu
Journal:  Med Image Anal       Date:  2015-07-06       Impact factor: 8.545

4.  Patch-based label fusion segmentation of brainstem structures with dual-contrast MRI for Parkinson's disease.

Authors:  Yiming Xiao; Vladimir S Fonov; Silvain Beriault; Ian Gerard; Abbas F Sadikot; G Bruce Pike; D Louis Collins
Journal:  Int J Comput Assist Radiol Surg       Date:  2014-09-24       Impact factor: 2.924

5.  Evaluating the effect of multiple sclerosis lesions on automatic brain structure segmentation.

Authors:  Sandra González-Villà; Sergi Valverde; Mariano Cabezas; Deborah Pareto; Joan C Vilanova; Lluís Ramió-Torrentà; Àlex Rovira; Arnau Oliver; Xavier Lladó
Journal:  Neuroimage Clin       Date:  2017-05-08       Impact factor: 4.881

6.  Brain structure segmentation in the presence of multiple sclerosis lesions.

Authors:  Sandra González-Villà; Arnau Oliver; Yuankai Huo; Xavier Lladó; Bennett A Landman
Journal:  Neuroimage Clin       Date:  2019-02-14       Impact factor: 4.881

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.